Updated bowtie to latest version

SciLifeLab · May 15, 2014 · 217e29f · 217e29f
1 parent 811da5c
commit 217e29f
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Showing 3 changed files with 39 additions and 38 deletions.
diff --git a/bowtie2/2.0.5 b/bowtie2/2.0.5
@@ -1 +1 @@
-2.1.0
+2.2.2
diff --git a/bowtie2/2.1.0 b/bowtie2/2.1.0
diff --git a/bowtie2/2.1.0 b/bowtie2/2.1.0
@@ -0,0 +1 @@
+2.2.2
diff --git a/bowtie2/2.2.2 b/bowtie2/2.2.2
@@ -0,0 +1,37 @@
+#%Module1.0#####################################################################
+##
+## bowtie2 modulefile
+##
+
+source $env(MODULE_INCLUDE)/functions.tcl
+getCluster
+
+set components [ file split [ module-info name ] ]
+set version [ lindex $components 1 ]
+
+set     modroot          /proj/a2010002/nobackup/sw/mf/bioinfo-tools/pipelines/bowtie2/$version
+
+proc ModulesHelp { } {
+        global version modroot
+
+        puts stderr "\tbowtie2 - use bowtie2 $version"
+        puts stderr "\n\tVersion $version\n"
+}
+
+module-whatis   "Loads bowtie2 environment."
+
+# Only one version at a time
+conflict bowtie2
+
+#Log loading to syslog
+logToSyslog
+
+if [module-info mode load] {
+    prepend-path        PATH            $modroot
+    setenv              BOWTIE2_HOME    $modroot
+}
+
+if [module-info mode remove] {
+    remove-path         PATH            $modroot
+    setenv              BOWTIE2_HOME    ""
+}