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@SlavovLab

Slavov Laboratory

We study post-transcriptional regulation at single-cell resolution using https://proteomics.single-cell.net Videos: https://youtube.slavovlab.net

Pinned

  1. DO-MS Public

    Modular and extensible visualization of mass-spec data

    R 15 4

  2. DART-ID Public

    DART-ID: retention time alignment and peptide identification confidence updates

    Python 8 2

  3. HIquant Public

    Forked from nslavov/HIquant

    HIquant: An algorithm for quantifying homologous proteins and proteoforms from bottom-up mass-spec data

    Python 2 1

  4. Forked from afranks86/tissue-ptr

    Code for analyzing post-transcriptional regulation across human tissues (Franks et al., 2017 DOI: 10.1371/journal.pcbi.1005535)

    R 3

Repositories

  • SCoPE2 Public
    R 3 1 0 7 Updated Oct 14, 2021
  • plexDIA Public

    Multiplexed data-independent acquisition (plexDIA) for increasing proteomics throughput

    0 0 0 0 Updated Oct 8, 2021
  • DO-MS Public

    Modular and extensible visualization of mass-spec data

    R 15 MIT 4 2 7 Updated Aug 11, 2021
  • DART-ID Public

    DART-ID: retention time alignment and peptide identification confidence updates

    Python 8 MIT 2 2 2 Updated Jun 9, 2021
  • HIquant Public

    HIquant: An algorithm for quantifying homologous proteins and proteoforms from bottom-up mass-spec data

    Python 2 2 0 0 Updated Apr 28, 2021
  • R 0 0 0 0 Updated Nov 9, 2020
  • Adding_PMCID Public

    Adds PubMed Central IDs to latex bibliographies (bbl files) to ensure compatibility with NIH requirements.

    Perl 1 0 0 0 Updated Jun 28, 2020
  • STLS Public

    Convex solver for structured total least squares problems

    MATLAB 0 0 0 0 Updated May 22, 2020
  • tissue-ptr Public

    Code for analyzing post-transcriptional regulation across human tissues (Franks et al., 2017 DOI: 10.1371/journal.pcbi.1005535)

    R 3 2 0 0 Updated May 3, 2020
  • ssGSEA2.0 Public

    Single sample Gene Set Enrichment analysis (ssGSEA) and PTM Enrichment Analysis (PTM-SEA)

    R 0 53 0 0 Updated May 28, 2019

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