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@SlavovLab

Slavov Laboratory

We study post-transcriptional regulation at single-cell resolution using https://proteomics.single-cell.net Videos: https://youtube.slavovlab.net

Pinned

  1. DO-MS DO-MS Public

    An modular and extensible app for visualization of mass spectrometry data and optimization of data acquisition.

    HTML 23 8

  2. DART-ID DART-ID Public

    DART-ID: retention time alignment and peptide identification confidence updates

    Python 13 4

  3. HIquant HIquant Public

    Forked from nslavov/HIquant

    HIquant: An algorithm for quantifying homologous proteins and proteoforms from bottom-up mass-spec data

    Python 2 1

  4. tissue-ptr tissue-ptr Public

    Forked from afranks86/tissue-ptr

    Code for analyzing post-transcriptional regulation across human tissues (Franks et al., 2017 DOI: 10.1371/journal.pcbi.1005535)

    R 3

Repositories

Showing 10 of 22 repositories
  • CellPermeability Public

    Cell Permeability analysis

    R 0 0 0 0 Updated May 19, 2024
  • EMT_TGFB_2023 Public

    Dynamics of single-cell protein covariation during EMT. Analysis of TGF-B induced EMT in MCF10A cells using nPoP and SCoPE2.

    R 0 0 1 0 Updated Apr 19, 2024
  • oocyte_aging Public

    A code repository for the analysis of proteome changes associated with oocyte aging

    R 0 MIT 0 1 0 Updated Apr 13, 2024
  • plexDIA Public

    Multiplexed data-independent acquisition (plexDIA) for increasing proteomics throughput. The code is distributed by an MIT license.

    R 10 2 0 0 Updated Apr 8, 2024
  • QuantQC Public

    QuantQC is a package for quality control (QC) of single-cell proteomics data. It is optimized to work with nPOP, a method for massively parallel sample preparation on glass slides.

    HTML 0 0 0 0 Updated Nov 29, 2023
  • DO-MS Public

    An modular and extensible app for visualization of mass spectrometry data and optimization of data acquisition.

    HTML 23 MIT 8 4 10 Updated Nov 28, 2023
  • SC_Pancreas_KO Public

    Code or analysis in paper: An adult-restricted clock component links circadian rhythms to pancreatic β-cell maturation

    R 0 0 0 0 Updated Aug 7, 2023
  • SCoPE2 Public
    R 14 6 0 11 Updated Jul 11, 2023
  • SCP_recommendations Public

    Initial recommendations for performing, benchmarking, and reporting single-cell proteomics experiments. The code is distributed under an MIT license.

    R 7 MIT 4 5 0 Updated Apr 5, 2023
  • DART-ID Public

    DART-ID: retention time alignment and peptide identification confidence updates

    Python 13 MIT 4 3 4 Updated Feb 21, 2023

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