An R package that implements the ALStructure algorithm for estimating the admixture model of genetic population structure
The corresponding manuscript:
Irineo Cabreros and John D. Storey. A nonparametric estimator of population structure unifying admixture models and principal components analysis. bioRxiv, https://www.biorxiv.org/content/early/2017/12/29/240812.
To install in R do:
library("devtools")
install_github("storeylab/alstructure", build_vignettes=TRUE)
To get started, read the vignette:
library("alstructure")
vignette("ALStructure_workflow", package="alstructure")