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- ModelTransmission
- ModelVivax
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- openmalariaTools
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- Running OpenMalaria
- ScenarioDesign
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- ScenarioTransmission
- ScenarioXML
- schema 10
- schema 10 intervs
- schema 11
- schema 11 intervs
- schema 12
- schema 12 intervs
- schema 13
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- schema 14
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- schema 2
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- schema 3
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- schema 30
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- schema 8
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- schema 9
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- schema current
- schema current intervs
- schema index
- SetupOverview
- SimulationOptions
- snippets
- Start
- SubPopulations
- Terminology
- TestSystem
- UnixBuildBoinc
- UnixBuildOpenMalaria
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- UtilsRunning
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- UtilsWindows
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- XmlEntoVector
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Introduction
Model structure and specification
- Human demography
- Levels of transmission
- Parasite dynamics within humans
- P vivax dynamics
- Vector bionomics and transmission to humans
- Mosquito population dynamics
- Clinical (illness) models
- Time in the models
Simulating Interventions
- Preventive interventions
- Case management
- Pharmacology and PKPD
- Drug resistance
- Diagnostics
- Decay of intervention effects
- Pseudo-interventions and related functionality
- Deprecated intervention specifications
Specifying output
Running simulations
- Getting started (local simulations)
- Installation of latest version
- Installation of previous versions
- Building from source
Tools
Technical Details
- Sequencing and time steps
- XML basics
- Current schema documentation (36)
- XML syntax (generated documentation)
- XML snippets
Code development
How to apply OpenMalaria to field sites
Publications on OpenMalaria
OpenMalaria
Welcome to the OpenMalaria wiki on GitHub.
This wiki details the model components required to capture the transmission of malaria, the processes leading to malaria disease and the action of interventions.
OpenMalaria is an open source C++ program for simulating malaria epidemiology and the impacts on that epidemiology of interventions against malaria. It is based on microsimulations of Plasmodium falciparum malaria in humans, originally developed for simulating malaria vaccines and described here. These models simulate the dynamics of malaria parasitaemia in the course of an infection, of transmission, of immunity, and of the processes leading to illness and death. The system is set up to simulate malaria in village, or district size human populations. OpenMalaria can be run as a stand-alone program or via various interfaces as described here.
Getting Started
OpenMalaria How-To - An easy guide to downloading and installing OpenMalaria, and running your first scenario.
Additional information
A glossary of useful terms related to OpenMalaria can be found here
Selected publications can be found here.
Three introductory PowerPoint presentations providing an idea of some of the capabilities of OpenMalaria are: Key Attributes, Drug Interventions, Vector Interventions.
Detailed Instructions for Running OpenMalaria
Team
The OpenMalaria development team includes staff of the Swiss Tropical and Public Health Institute (Swiss TPH), and the Liverpool School of Tropical Medicine. Financial support is from the Bill & Melinda Gates Foundation
Offline Documentation
In case you wish to have access to the documentation on this wiki without an internet connection, you can clone this repository:
git clone https://github.com/SwissTPH/openmalaria.wiki.git
If you want to be able to change wiki pages with git you need to clone the wiki via git clone git@github.com:SwissTPH/openmalaria.wiki.git and provide an SSH-key in your user options.
| Download openmalaria | Installation instructions | XML Schema Documentation |
|---|
Status
| XML Schema Version | Program version | master |
develop |
|---|---|---|---|
| 36 | schema-36.1 |
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