[Merged by Bors] - Compat with new Bijectors.jl #454
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Codecov ReportBase: 80.59% // Head: 74.39% // Decreases project coverage by
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## master #454 +/- ##
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- Coverage 80.59% 74.39% -6.20%
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Files 20 20
Lines 2458 2445 -13
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This PR makes DPPL compatible with the changes to come in TuringLang/Bijectors.jl#214. Tests are passing locally. Closes #455 Closes #456
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…eep existing compat) (#469) * Fixed a typo in tutorial (#451) * CompatHelper: bump compat for Turing to 0.24 for package turing, (keep existing compat) (#450) This pull request changes the compat entry for the `Turing` package from `0.21` to `0.21, 0.24` for package turing. This keeps the compat entries for earlier versions. Note: I have not tested your package with this new compat entry. It is your responsibility to make sure that your package tests pass before you merge this pull request. Co-authored-by: Hong Ge <3279477+yebai@users.noreply.github.com> * Some minor utility improvements (#452) This PR does the following: - Moves the `varname_leaves` from `TestUtils` to main module. - It can be very useful in Turing.jl for constructing `Chains` and the like, so I think it's a good idea to make it part of the main module rather than keeping it "hidden" there. - Makes the default `varinfo` in the constructor of `LogDensityFunction` be `model.context` rather than a new `DynamicPPL.DefaultContext`. - The `context` pass to `evaluate!!` will override the leaf-context in `model.context`, and so the current default constructor always uses `DefaultContext` as the leaf-context, even if the `Model` has been `contextualize`d with some other leaf-context, e.g. `PriorContext`. This PR fixes this issue. * Always run CI (#453) I find the current `bors` workflow a bit tedious. Most of the time, I summon `bors` to see the CI results (see e.g. #438). Given that most `CI` tests are quick (< 10mins), we can always run them by default. The most time-consuming `IntegrationTests` is still run by `bors` to avoid excessive CI runs. * Compat with new Bijectors.jl (#454) This PR makes DPPL compatible with the changes to come in TuringLang/Bijectors.jl#214. Tests are passing locally. Closes #455 Closes #456 * Another Bijectors.jl compat bound bump (#457) * CompatHelper: bump compat for MCMCChains to 6 for package test, (keep existing compat) (#467) This pull request changes the compat entry for the `MCMCChains` package from `4.0.4, 5` to `4.0.4, 5, 6` for package test. This keeps the compat entries for earlier versions. Note: I have not tested your package with this new compat entry. It is your responsibility to make sure that your package tests pass before you merge this pull request. Co-authored-by: Hong Ge <3279477+yebai@users.noreply.github.com> * CompatHelper: bump compat for AbstractPPL to 0.6 for package test, (keep existing compat) --------- Co-authored-by: Hong Ge <3279477+yebai@users.noreply.github.com> Co-authored-by: github-actions[bot] <compathelper_noreply@julialang.org> Co-authored-by: Tor Erlend Fjelde <tor.erlend95@gmail.com>
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This PR makes DPPL compatible with the changes to come in TuringLang/Bijectors.jl#214.
Tests are passing locally.
Closes #455 Closes #456