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Show citation for PMID #957

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mmc46 opened this issue Jul 18, 2016 · 6 comments
Open

Show citation for PMID #957

mmc46 opened this issue Jul 18, 2016 · 6 comments
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@mmc46
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mmc46 commented Jul 18, 2016

For a paper with a FBrf, in most cases, we show the citation.
It would be good if this was also the case for PMID ids. Currently this is the text:

References:

PubMed ref PMID:20832311

(link to PubMed page)

Only by clicking on the link can I see what paper this is. So it would be more useful to remove this extra step and provide the citation on the page.

This might be useful
https://pypi.python.org/pypi/pubmed-lookup

http://www.ncbi.nlm.nih.gov/pmc/tools/developers/#pmc-repos

@dosumis
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dosumis commented Jul 18, 2016

This should be fixed in neo (:Class|Individual)-[:has_reference]-(:Pub). Links are currently missing for Individuals. (:Pub) nodes all have PMIDs (if they exist). I can make sure that any PMIDs in def/synonym dbxrefs on OWL entities are used to create links to (:Pub) nodes (currently only FBrfs are).

@Robbie1977
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Haven't finished working on neo version of the term info page but the refs should be resolved on http://vfbdev.inf.ed.ac.uk

@mmc46
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mmc46 commented Jul 20, 2016

Term info is showing only the id.

On 20 Jul 2016, at 17:19, Rob Court notifications@github.com wrote:

Haven't finished working on neo version of the term info page but the refs should be resolved on http://vfbdev.inf.ed.ac.uk http://vfbdev.inf.ed.ac.uk/

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@mmc46
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mmc46 commented Jul 22, 2016

These were the first 2 examples I checked:

@Robbie1977
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Showing in the Def references just not in the bibliography as currently I only have the PMID id.
I believe @dosumis is going to load the full details from Pubmed in future so this should then appear.

@Robbie1977
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See VirtualFlyBrain/VFB_neo4j#10

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