qcnumcnv

[psychrb]

For filter.cnv.pl:

1. What is the default for qcnumcnv without inserting a flag..? If this flag is not added, is there any filtering..?
2. This is the maximum number of cnv's/sample for inclusion in filtered output, correct?..
   So if qcnumcnv 80 is inserted, a sample with more than 80 will be excluded, correct?

[kaichop]

If it is not specified, then the filter is not used. The number depends on the array, and is typically selected by researchers themselves based on extreme value that are observed in a specific data set, to exclude some samples from analysis.

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On Tue, Mar 2, 2021 at 10:55 AM psychrb ***@***.***> wrote: For filter.cnv.pl: 1. What is the default for qcnumcnv without inserting a flag..? If this flag is not added, is there any filtering..? 2. This is the maximum number of cnv's/sample for inclusion in filtered output, correct?.. So if qcnumcnv 80 is inserted, a sample with more than 80 will be excluded, correct? — You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub <#70>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/ABNG3ODTDTL5MLVYDH2OYK3TBUC7NANCNFSM4YPHVD5Q> .