Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

MAP analysis with Mitocheck Single cell dataset #1

Merged
merged 38 commits into from
Jan 23, 2024
Merged

MAP analysis with Mitocheck Single cell dataset #1

merged 38 commits into from
Jan 23, 2024

Commits on Dec 5, 2023

  1. added data download

    @axiomcura
    axiomcura committed Dec 5, 2023
    Configuration menu
    Copy the full SHA
    a60520e View commit details
    Browse the repository at this point in the history

  2. updated notebook

    @axiomcura
    axiomcura committed Dec 5, 2023
    Configuration menu
    Copy the full SHA
    616bdc8 View commit details
    Browse the repository at this point in the history

Commits on Dec 6, 2023

  1. MAP init

    @axiomcura
    axiomcura committed Dec 6, 2023
    Configuration menu
    Copy the full SHA
    40b5677 View commit details
    Browse the repository at this point in the history

  2. added script version of notebook

    @axiomcura
    axiomcura committed Dec 6, 2023
    Configuration menu
    Copy the full SHA
    0007667 View commit details
    Browse the repository at this point in the history

Commits on Dec 7, 2023

  1. updated script and notebok

    @axiomcura
    axiomcura committed Dec 7, 2023
    Configuration menu
    Copy the full SHA
    edf8dfb View commit details
    Browse the repository at this point in the history

  2. displays error

    @axiomcura
    axiomcura committed Dec 7, 2023
    Configuration menu
    Copy the full SHA
    d04f88e View commit details
    Browse the repository at this point in the history

  3. added small dataset

    @axiomcura
    axiomcura committed Dec 7, 2023
    Configuration menu
    Copy the full SHA
    1f9de35 View commit details
    Browse the repository at this point in the history

  4. added example notebook to reproduce error

    @axiomcura
    axiomcura committed Dec 7, 2023
    Configuration menu
    Copy the full SHA
    a212549 View commit details
    Browse the repository at this point in the history

  5. updated env

    @axiomcura
    axiomcura committed Dec 7, 2023
    Configuration menu
    Copy the full SHA
    751e38e View commit details
    Browse the repository at this point in the history

Commits on Dec 15, 2023

  1. added mAP scores control vs phenotype

    @axiomcura
    axiomcura committed Dec 15, 2023
    Configuration menu
    Copy the full SHA
    0489176 View commit details
    Browse the repository at this point in the history

  2. added processed mAP scores

    @axiomcura
    axiomcura committed Dec 15, 2023
    Configuration menu
    Copy the full SHA
    fcc76b6 View commit details
    Browse the repository at this point in the history

  3. updated dataset and analysis

    @axiomcura
    axiomcura committed Dec 15, 2023
    Configuration menu
    Copy the full SHA
    345e689 View commit details
    Browse the repository at this point in the history

  4. added plots

    @axiomcura
    axiomcura committed Dec 15, 2023
    Configuration menu
    Copy the full SHA
    8dba89e View commit details
    Browse the repository at this point in the history

Commits on Dec 20, 2023

  1. added new data

    @axiomcura
    axiomcura committed Dec 20, 2023
    Configuration menu
    Copy the full SHA
    891fab6 View commit details
    Browse the repository at this point in the history

  2. aggregated data added

    @axiomcura
    axiomcura committed Dec 20, 2023
    Configuration menu
    Copy the full SHA
    ee1afb4 View commit details
    Browse the repository at this point in the history

Commits on Dec 24, 2023

  1. updated with plots

    @axiomcura
    axiomcura committed Dec 24, 2023
    Configuration menu
    Copy the full SHA
    be9c975 View commit details
    Browse the repository at this point in the history

Commits on Jan 15, 2024

  1. added tests for utils

    @axiomcura
    axiomcura committed Jan 15, 2024
    Configuration menu
    Copy the full SHA
    589bd52 View commit details
    Browse the repository at this point in the history

  2. added utils functions

    @axiomcura
    axiomcura committed Jan 15, 2024
    Configuration menu
    Copy the full SHA
    57484d9 View commit details
    Browse the repository at this point in the history

  3. added average percision box plot

    @axiomcura
    axiomcura committed Jan 15, 2024
    Configuration menu
    Copy the full SHA
    a444e45 View commit details
    Browse the repository at this point in the history

Commits on Jan 16, 2024

  1. added mitocheck comparisons

    @axiomcura
    axiomcura committed Jan 16, 2024
    Configuration menu
    Copy the full SHA
    f812e58 View commit details
    Browse the repository at this point in the history

  2. update

    @axiomcura
    axiomcura committed Jan 16, 2024
    Configuration menu
    Copy the full SHA
    2949e22 View commit details
    Browse the repository at this point in the history

Commits on Jan 17, 2024

  1. added pre-commit; file formatting

    @axiomcura
    axiomcura committed Jan 17, 2024
    Configuration menu
    Copy the full SHA
    bae4142 View commit details
    Browse the repository at this point in the history

Commits on Jan 18, 2024

  1. update with correct parameters and plots

    @axiomcura
    axiomcura committed Jan 18, 2024
    Configuration menu
    Copy the full SHA
    60a7c3b View commit details
    Browse the repository at this point in the history

Commits on Jan 19, 2024

  1. updated data and plots and processing

    @axiomcura
    axiomcura committed Jan 19, 2024
    Configuration menu
    Copy the full SHA
    5b0cd17 View commit details
    Browse the repository at this point in the history

  2. updated file names

    @axiomcura
    axiomcura committed Jan 19, 2024
    Configuration menu
    Copy the full SHA
    eacaaa6 View commit details
    Browse the repository at this point in the history

Commits on Jan 22, 2024

  1. updated docs and notebooks

    @axiomcura
    axiomcura committed Jan 22, 2024
    Configuration menu
    Copy the full SHA
    dc7587a View commit details
    Browse the repository at this point in the history

  2. added/updated nbconverted script of notebooks

    @axiomcura
    axiomcura committed Jan 22, 2024
    Configuration menu
    Copy the full SHA
    a14015e View commit details
    Browse the repository at this point in the history

  3. updated documentation

    @axiomcura
    axiomcura committed Jan 22, 2024
    Configuration menu
    Copy the full SHA
    5b30797 View commit details
    Browse the repository at this point in the history

  4. added downloaded.py script

    @axiomcura
    axiomcura committed Jan 22, 2024
    Configuration menu
    Copy the full SHA
    fb36df5 View commit details
    Browse the repository at this point in the history

  5. formatting

    @axiomcura
    axiomcura committed Jan 22, 2024
    Configuration menu
    Copy the full SHA
    ddc07d1 View commit details
    Browse the repository at this point in the history

Commits on Jan 23, 2024

  1. added pycytominer feature select tp mAP process

    @axiomcura
    axiomcura committed Jan 23, 2024
    Configuration menu
    Copy the full SHA
    5408701 View commit details
    Browse the repository at this point in the history

  2. Update src/utils.py 

    Co-authored-by: Mike Lippincott <58147848+MikeLippincott@users.noreply.github.com>
    @axiomcura @MikeLippincott
    axiomcura and MikeLippincott authored Jan 23, 2024
    Configuration menu
    Copy the full SHA
    aa7f5a9 View commit details
    Browse the repository at this point in the history

  3. Update setup.py 

    Co-authored-by: Mike Lippincott <58147848+MikeLippincott@users.noreply.github.com>
    @axiomcura @MikeLippincott
    axiomcura and MikeLippincott authored Jan 23, 2024
    Configuration menu
    Copy the full SHA
    b5638f6 View commit details
    Browse the repository at this point in the history

  4. updates

    @axiomcura
    axiomcura committed Jan 23, 2024
    Configuration menu
    Copy the full SHA
    a981044 View commit details
    Browse the repository at this point in the history

  5. Update notebooks/mitocheck-map-plotting.py 

    Co-authored-by: Mike Lippincott <58147848+MikeLippincott@users.noreply.github.com>
    @axiomcura @MikeLippincott
    axiomcura and MikeLippincott authored Jan 23, 2024
    Configuration menu
    Copy the full SHA
    5f85f6e View commit details
    Browse the repository at this point in the history

  6. updates

    @axiomcura
    axiomcura committed Jan 23, 2024
    Configuration menu
    Copy the full SHA
    05d0bcb View commit details
    Browse the repository at this point in the history

  7. update

    @axiomcura
    axiomcura committed Jan 23, 2024
    Configuration menu
    Copy the full SHA
    1f1f482 View commit details
    Browse the repository at this point in the history

  8. update

    @axiomcura
    axiomcura committed Jan 23, 2024
    Configuration menu
    Copy the full SHA
    bcb4c6e View commit details
    Browse the repository at this point in the history