Install and import

[Yuxin-Cui]

Dear there,

I have tried to test it, but was stuck at the import step. After run import portal under Jupyter lab. The following error message developed:

---

ModuleNotFoundError Traceback (most recent call last)
Input In [15], in <cell line: 1>()
----> 1 import portal

File C:\jlab_server\lib\site-packages\portal_init_.py:3, in
1 from future import absolute_import
----> 3 from .api import API, APIException
4 from ._version import version
6 all = ['API', 'APIException']

File C:\jlab_server\lib\site-packages\portal\api.py:4, in
1 #!/usr/bin/env python
2 from functools import wraps
----> 4 import cookielib
5 import HTMLParser
6 import json

ModuleNotFoundError: No module named 'cookielib'

I hav tried to fix it, by running:

import http.cookiejar
cookielib = http.cookiejar

But this issue remains the same.

I wonder whether you could help to fix it.

Thanks

[jiazhao97]

Hi there,

Thank you for your interest in our Portal package!

I wonder did you install our package with the command pip install portal? If so, the package you installed is https://github.com/jlopez/portal, instead of ours. If you want to try our package, please follow https://github.com/YangLabHKUST/Portal#installation to install our package.

Best,
Jia

[Yuxin-Cui]

Thanks! I tried again using pip install portal-sc. The error message was:

[jiazhao97]

This error occurred during installing louvain package. The reason may be that setuptools>=58 does not support use_2to3 (see this link). Can you try pip install setuptools==57.5.0? Alternatively, you can try the following command to install Portal package:

git clone https://github.com/YangLabHKUST/Portal.git
cd Portal
conda env update --f environment.yml
conda activate portal