Error during gscripts install #62
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you need cython: conda install cython On Wed Feb 18 2015 at 1:10:42 PM Shashank Sathe notifications@github.com
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After running git pull and setup.py install, I get the following error:
"Running clipper-0.2.0/setup.py -q bdist_egg --dist-dir /tmp/easy_install-E0fvqu/clipper-0.2.0/egg-dist-tmp-xYEn2w
Traceback (most recent call last):
File "setup.py", line 94, in
zip_safe=False #True I think
File "/projects/ps-yeolab/software/anaconda-2.1.0_2015-01-20/envs/ssathe_env/lib/python2.7/distutils/core.py", line 151, in setup
dist.run_commands()
File "/projects/ps-yeolab/software/anaconda-2.1.0_2015-01-20/envs/ssathe_env/lib/python2.7/distutils/dist.py", line 953, in run_commands
self.run_command(cmd)
File "/projects/ps-yeolab/software/anaconda-2.1.0_2015-01-20/envs/ssathe_env/lib/python2.7/distutils/dist.py", line 972, in run_command
cmd_obj.run()
File "/projects/ps-yeolab/software/anaconda-2.1.0_2015-01-20/envs/ssathe_env/lib/python2.7/site-packages/setuptools-12.0.4-py2.7.egg/setuptools/command/install.py", line 67, in run
File "/projects/ps-yeolab/software/anaconda-2.1.0_2015-01-20/envs/ssathe_env/lib/python2.7/site-packages/setuptools-12.0.4-py2.7.egg/setuptools/command/install.py", line 117, in do_egg_install
File "/projects/ps-yeolab/software/anaconda-2.1.0_2015-01-20/envs/ssathe_env/lib/python2.7/site-packages/setuptools-12.0.4-py2.7.egg/setuptools/command/easy_install.py", line 374, in run
File "/projects/ps-yeolab/software/anaconda-2.1.0_2015-01-20/envs/ssathe_env/lib/python2.7/site-packages/setuptools-12.0.4-py2.7.egg/setuptools/command/easy_install.py", line 604, in easy_install
File "/projects/ps-yeolab/software/anaconda-2.1.0_2015-01-20/envs/ssathe_env/lib/python2.7/site-packages/setuptools-12.0.4-py2.7.egg/setuptools/command/easy_install.py", line 655, in install_item
File "/projects/ps-yeolab/software/anaconda-2.1.0_2015-01-20/envs/ssathe_env/lib/python2.7/site-packages/setuptools-12.0.4-py2.7.egg/setuptools/command/easy_install.py", line 703, in process_distribution
File "/projects/ps-yeolab/software/anaconda-2.1.0_2015-01-20/envs/ssathe_env/lib/python2.7/site-packages/setuptools-12.0.4-py2.7.egg/pkg_resources/init.py", line 797, in resolve
File "/projects/ps-yeolab/software/anaconda-2.1.0_2015-01-20/envs/ssathe_env/lib/python2.7/site-packages/setuptools-12.0.4-py2.7.egg/pkg_resources/init.py", line 1047, in best_match
File "/projects/ps-yeolab/software/anaconda-2.1.0_2015-01-20/envs/ssathe_env/lib/python2.7/site-packages/setuptools-12.0.4-py2.7.egg/pkg_resources/init.py", line 1059, in obtain
File "/projects/ps-yeolab/software/anaconda-2.1.0_2015-01-20/envs/ssathe_env/lib/python2.7/site-packages/setuptools-12.0.4-py2.7.egg/setuptools/command/easy_install.py", line 623, in easy_install
File "/projects/ps-yeolab/software/anaconda-2.1.0_2015-01-20/envs/ssathe_env/lib/python2.7/site-packages/setuptools-12.0.4-py2.7.egg/setuptools/command/easy_install.py", line 653, in install_item
File "/projects/ps-yeolab/software/anaconda-2.1.0_2015-01-20/envs/ssathe_env/lib/python2.7/site-packages/setuptools-12.0.4-py2.7.egg/setuptools/command/easy_install.py", line 838, in install_eggs
File "/projects/ps-yeolab/software/anaconda-2.1.0_2015-01-20/envs/ssathe_env/lib/python2.7/site-packages/setuptools-12.0.4-py2.7.egg/setuptools/command/easy_install.py", line 1066, in build_and_install
File "/projects/ps-yeolab/software/anaconda-2.1.0_2015-01-20/envs/ssathe_env/lib/python2.7/site-packages/setuptools-12.0.4-py2.7.egg/setuptools/command/easy_install.py", line 1052, in run_setup
File "/projects/ps-yeolab/software/anaconda-2.1.0_2015-01-20/envs/ssathe_env/lib/python2.7/site-packages/setuptools-12.0.4-py2.7.egg/setuptools/sandbox.py", line 238, in run_setup
File "/projects/ps-yeolab/software/anaconda-2.1.0_2015-01-20/envs/ssathe_env/lib/python2.7/contextlib.py", line 35, in exit
self.gen.throw(type, value, traceback)
File "/projects/ps-yeolab/software/anaconda-2.1.0_2015-01-20/envs/ssathe_env/lib/python2.7/site-packages/setuptools-12.0.4-py2.7.egg/setuptools/sandbox.py", line 191, in setup_context
File "/projects/ps-yeolab/software/anaconda-2.1.0_2015-01-20/envs/ssathe_env/lib/python2.7/contextlib.py", line 35, in exit
self.gen.throw(type, value, traceback)
File "/projects/ps-yeolab/software/anaconda-2.1.0_2015-01-20/envs/ssathe_env/lib/python2.7/site-packages/setuptools-12.0.4-py2.7.egg/setuptools/sandbox.py", line 162, in save_modules
File "/projects/ps-yeolab/software/anaconda-2.1.0_2015-01-20/envs/ssathe_env/lib/python2.7/site-packages/setuptools-12.0.4-py2.7.egg/setuptools/sandbox.py", line 137, in resume
File "/projects/ps-yeolab/software/anaconda-2.1.0_2015-01-20/envs/ssathe_env/lib/python2.7/site-packages/setuptools-12.0.4-py2.7.egg/setuptools/sandbox.py", line 150, in save_modules
File "/projects/ps-yeolab/software/anaconda-2.1.0_2015-01-20/envs/ssathe_env/lib/python2.7/site-packages/setuptools-12.0.4-py2.7.egg/setuptools/sandbox.py", line 191, in setup_context
File "/projects/ps-yeolab/software/anaconda-2.1.0_2015-01-20/envs/ssathe_env/lib/python2.7/site-packages/setuptools-12.0.4-py2.7.egg/setuptools/sandbox.py", line 235, in run_setup
File "/projects/ps-yeolab/software/anaconda-2.1.0_2015-01-20/envs/ssathe_env/lib/python2.7/site-packages/setuptools-12.0.4-py2.7.egg/setuptools/sandbox.py", line 265, in run
File "/projects/ps-yeolab/software/anaconda-2.1.0_2015-01-20/envs/ssathe_env/lib/python2.7/site-packages/setuptools-12.0.4-py2.7.egg/setuptools/sandbox.py", line 234, in runner
File "/projects/ps-yeolab/software/anaconda-2.1.0_2015-01-20/envs/ssathe_env/lib/python2.7/site-packages/setuptools-12.0.4-py2.7.egg/setuptools/sandbox.py", line 46, in _execfile
File "/tmp/easy_install-E0fvqu/clipper-0.2.0/setup.py", line 5, in
'annotations/gencode_annotate_utrs_5p_3p.pl',
ImportError: No module named Cython.Distutils"
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