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pd.read_csv is NOT all you need: DataFrame validation in Python

Notes and code for my Python DataFrame Validation talk.

Outline

This talk aims to describe:

  • That you need to be dealing with your messy inconsistent data
  • You should use data validation to handle your data
  • And validation should occur before you do any processing + analysis
  • We focus on validation of dataframes i.e. table objects in Python
  • We present several approaches of varying quality and effectiveness

The talk is composed of two parts:

  • A slide deck of introductions and concepts (see: reports/slides.md)
  • And a demonstration notebook of various strategies (see: notebooks/demo.ipynb)

Getting Started

Requirements for install:

  • a unix command line (untested on windows powershell but doable with some expertise)
  • make
  • miniconda (or similar)

To follow along with this on your own machine:

  1. git clone the entire repo:
git clone https://github.com/adamdoescode/PyValidationTalk
  1. make the conda environment from the environment.yml:
cd PyValidationTalk/
make create_environment
  1. activate the environment:
conda activate PyValidationTalk

You should now be able to run the demo.ipynb notebook!

Project Organization

├── LICENSE            <- Open-source license if one is chosen
├── Makefile           <- Makefile with convenience commands like `make data` or `make train`
├── README.md          <- The top-level README for developers using this project.
├── data
│   └── generated      <- Data generated as part of this talk
│
├── docs               <- A default mkdocs project; see www.mkdocs.org for details
│
├── notebooks          <- Jupyter notebooks.
│
├── pyproject.toml     <- Project configuration file with package metadata for 
│                         PyVal and configuration for tools like black
│
├── reports            <- Generated analysis as HTML, PDF, LaTeX, etc.
│   └── figures        <- Generated graphics and figures to be used in reporting
│
├── environment.yml    <- The requirements file for reproducing the analysis environment, e.g.
│
├── setup.cfg          <- Configuration file for flake8
│
└── PyVal   <- Source code for use in this project.
    │
    ├── __init__.py             <- Makes PyVal a Python module
    │
    └── config.py               <- Store useful variables and configuration

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Notes and code for my python dataframe validation talk at PythonWA

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