Gigwa2

Gigwa aims at managing genomic and genotyping data from NGS analyses. It is a tool targeted at users with little computer expertise, providing means to explore visually large amounts of genotyping data by filtering it based not only on variant features including functional annotations, but also on genotypes themselves. It also offers several popular export formats and a density chart visualizer.

Try Gigwa online with public datasets at https://gigwa.southgreen.fr/

Latest webapp and bundles are now available for download on Gigwa homepage: http://southgreen.fr/content/gigwa

Check the wiki:

https://github.com/SouthGreenPlatform/Gigwa2/wiki

Developer instructions

The source code is available in this repository. It uses Maven for dependency management and requires the following dependencies to be present in your workspace :

https://github.com/SouthGreenPlatform/GenotypeFileManipulation

https://github.com/SouthGreenPlatform/Mgdb2

https://github.com/SouthGreenPlatform/Mgdb2Export

https://github.com/SouthGreenPlatform/role_manager

https://github.com/SouthGreenPlatform/Mgdb2BrapiImpl

https://github.com/SouthGreenPlatform/Gigwa2ServiceInterface

https://github.com/SouthGreenPlatform/Gigwa2ServiceImpl

https://github.com/SouthGreenPlatform/Mgdb2BrapiV2Impl (under development, may be disabled by commenting out Mgdb2BrapiV2Impl dependency in Gigwa2's pom.xml)