v1.4.0

Added

• #14 unifrac for both weighted/unweighted and normalized options.
• #14 bray for both weighted/unweighted options.
• #14 jaccard for both weighted/unweighted options.
• #14 jsd for both weighted/unweighted options.
• #14 cosine for both weighted/unweighted options.
• #14 canberra for both weighted/unweighted options.
• #14 manhattan for both weighted/unweighted options.
• omics$distance as wrapper for all new dissimilarity metrics.
• #18 pairwise_adonis2 and pairwise_anosim now allow custom permutation designs from permute R package.
• Unit tests for dissimilarity metrics

Changed

• metagenomics and proteomics classes now align the countData (rows) and featureData by the treeData tip.labels.
• omics$ordination uses now omics$distance to compute dissimilarity metrics (previously computed via rbiom).
• Example data loaded from inst/extdata instead of re-using mock.rds object.

Fixed

• #15 Fixed flipped log2 values when condition A or B is zero.
• #17 Docker is built via pak from github instead of CRAN.

Deprecated

• #13 Removed viridis dependency, purrr:map is replaced by lapply
• Removed rbiom and it's dependency slam.