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Seaborn Plots #62

Merged
merged 31 commits into from
Sep 10, 2019
Merged

Seaborn Plots #62

merged 31 commits into from
Sep 10, 2019

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jeff-hernandez
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@jeff-hernandez jeff-hernandez commented Aug 29, 2019

This PR uses Seaborn for plotting Label Times. Theses are plot examples for categorical and continuous Label Times. Closes #60. Closes #16 . Closes #56 .

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codecov bot commented Aug 29, 2019

Codecov Report

Merging #62 into master will not change coverage.
The diff coverage is 100%.

@@          Coverage Diff          @@
##           master    #62   +/-   ##
=====================================
  Coverage     100%   100%           
=====================================
  Files          16     17    +1     
  Lines         532    629   +97     
=====================================
+ Hits          532    629   +97
Impacted Files Coverage Δ
composeml/label_plots.py 100% <100%> (ø)
composeml/tests/utils.py 100% <100%> (ø) ⬆️
composeml/label_maker.py 100% <100%> (ø) ⬆️
composeml/tests/test_label_times.py 100% <100%> (ø) ⬆️
composeml/tests/test_label_maker.py 100% <100%> (ø) ⬆️
composeml/tests/test_label_plots.py 100% <100%> (ø) ⬆️
...seml/tests/test_label_transforms/test_threshold.py 100% <100%> (ø) ⬆️
composeml/conftest.py 100% <100%> (ø) ⬆️
composeml/label_times.py 100% <100%> (ø) ⬆️

@kmax12
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kmax12 commented Aug 30, 2019

does count by time make sense for continuous? I feel like it only makes sense if you were to bucket it in discrete labels or if you take some sort of rolling average by time

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jeff-hernandez commented Aug 30, 2019

I agree. When count_by_time is called with continuous labels, not sure whether to:

  • make discrete automatically before plotting
  • return none
  • raise an error

Also, do we want to plot: continuous labels vs. cutoff times?

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kmax12 commented Aug 30, 2019

maybe just use overall total number of label by time. don't try to break it up at all.

@kmax12 kmax12 reopened this Aug 30, 2019
@jeff-hernandez
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jeff-hernandez commented Aug 30, 2019

I see. So, we'd just count event per cutoff time without grouping by label.

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jeff-hernandez commented Aug 30, 2019

Updated plot for count by time here. May need a hard refresh in browser to remove cached files.

labels = labels.groupby(self.name)
distribution = labels['count'].count()
return distribution
def _is_categorical(self):
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I think a user should be able to provide a label_type parameter to override this. Label types could be "categorical" or "continuous". we can also pass this parameter through when using the label maker. for example, bin would know to pass categorical through.

In terms of infer categorical, I'd also check for any non numeric dtyes like objects, strs, or the pandas categorical dtype

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additionally, we only want to be calculating this once when the labeltime are initialized, not every time _is_categorical is accessed

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@jeff-hernandez jeff-hernandez Sep 3, 2019

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What do you think about overriding it by using type hints?

>>> def labeling_function(df) -> 'categorical':
...

>>> labeling_function.__annotations__
{'return': 'categorical'}

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Also, casting label times to categorical dtype if categorical. Related to #60.

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I don't think that the type hints for annotations is very intuitive. might just be better to make it a parameter to the label maker

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okay, will make parameter for label_type

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the new plotting stuff looks good. just some comments on how we do the label type inference

composeml/label_maker.py Show resolved Hide resolved
composeml/label_times.py Show resolved Hide resolved
@@ -1,9 +1,10 @@
import pandas as pd

from composeml.label_plots import LabelPlots


class LabelTimes(pd.DataFrame):
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the label times class should store the type of label it is

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added label_type attribute to label times

value = self.groupby('cutoff_time')
value = value[self.name].count()
value = value.cumsum()
return value

def describe(self):
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the describe method should say the label type

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@jeff-hernandez jeff-hernandez Sep 9, 2019

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Should label type be under settings? I guess it is a parameter of search.

@@ -327,14 +329,23 @@ def search(self,

labels = LabelTimes(data=labels, name=name, target_entity=self.target_entity)
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we should pass the label type to the LabelTime so it can track it as well. perhaps even move the logic to handle and check is into the init.

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moved check to label times init


else:
labels = labels.infer_type()
if labels.label_type == 'discrete':
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can we do this casting before we init the label_times? like above line 330

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Labels are records (list of dictionaries) above line 330. Should I pass records to a pandas data frame to make categorical before initializing label times?

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I see. it's fine to leave it here then

error = 'label type must be "continuous" or "discrete"'
assert label_type in ['continuous', 'discrete'], error

if label_type is None and name in self.columns:
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why would name not be in self.columns?

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Came across behavior where pandas would initialize label times without passing value for name. I refactored logic to infer inside is_discrete only if label type is none. link

if is_discrete:
return True

labels = self[self.name].iloc[:100]
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for now, let's only look at the dtype to infer type. we can always add this functionality in later

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updated function

@@ -320,16 +355,9 @@ def infer_type(self):
"""Infer label type.

Returns:
LabelTimes : Label Times as inferred type.
str : Inferred label type. Can be "continuous" or "discrete".
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I think intuitively I'd expect the logic in is_discrete to be here in infer_type and then I'd expect is_discrete to just check if label_type == "discrete.

then every we currently check if self.label_type == 'discrete' we'd just replace with is_discrete

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updated logic

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LGTM

@jeff-hernandez jeff-hernandez merged commit 50e9f90 into master Sep 10, 2019
@jeff-hernandez jeff-hernandez mentioned this pull request Sep 10, 2019
@jeff-hernandez jeff-hernandez deleted the seaborn-plots branch September 13, 2019 18:55
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Plotly Backend Cast Categorical Seaborn Plots
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