v0.4.0

Full Changelog: v0.3.1...v0.4.0

Added

• .fai index support for FASTQ. Equality operators on ID columns will seek directly to record instead of scanning if a .fai file is alongside the fastq file.
• has_stop_codon(sequence): returns true if any stop codon (TAA, TAG, TGA / UAA, UAG, UGA) is present in the sequence. Reading frame agnostic.

Breaking Changes

• fasta and fastq modules are now registered as StandardModule only. Eponymous call syntax (FROM fasta('file.fa')) is no longer supported. All
  usage must go through CREATE VIRTUAL TABLE:

  -- before (no longer works)
  SELECT * FROM fasta('genome.fa') WHERE id = 'chr1';
  
  -- after
  CREATE VIRTUAL TABLE genome USING fasta('genome.fa');
  SELECT * FROM genome WHERE id = 'chr1';