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v0.4.1

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@github-actions github-actions released this 01 Jun 04:31
· 16 commits to main since this release
v0.4.1
b66a462

Full Changelog: v0.4.0...v0.4.1

Added

  • complement(sequence): generates complement of a DNA/RNA sequence.
  • max_quality(quality): maximum Phred quality score of a FASTQ quality string.
  • base_totals(sequence): aggregate that accumulates per-base counts (A, C, G, T, U) across all sequences in a result set, returned as JSON.
  • bgzf seek support for FASTA and FASTQ. .gz files with a .fai alongside are now opened via noodles_bgzf and use block-level seeking for id = queries instead of full-file scanning.

Fixed

  • Indexed .fai queries on .gz files no longer hang. The reader would attempt to seek into compressed binary data using the raw FAI offset, causing an infinite loop in the backward scan for the > record delimiter. .gz files now properly fall back to streaming.
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