install_rnaseq.sh - install several useful bioinformatics tools for BRB-SeqTools.
- Bcftools
- Bowtie2
- BWA
- FastQC
- fastx
- HTSeq
- Picard-tools
- Samtools
- SnpEff
- SRAtoolkit
- STAR
- Tophat
and
- avfs for mounting a tarball
- Java 8 (from Sun or OpenJDK)
- Latex
- lftp
- parallel
- python and pip
- PANDOC
- R including the rmakrdown package