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feat: Group export scripts #389

Merged
merged 7 commits into from
Aug 2, 2021
Merged

feat: Group export scripts #389

merged 7 commits into from
Aug 2, 2021

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Bingjiling
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@Bingjiling Bingjiling commented Jul 23, 2021

Issue #, if available:

Description of changes:

  • Add script to filter out search parameters needed by patient compartment
  • Update script and serverless.yml to upload the generated JSON file to S3 for Glue job to reference
  • Tested JSON files are uploaded successfully and can be used by the Glue job
  • Update export script to handle group export
  • Manually tested group export E2E
  • WIP - integ tests

Checklist:

  • Have you successfully deployed to an AWS account with your changes?
  • Have you written new tests for your core changes, as applicable?

By submitting this pull request, I confirm that my contribution is made under the terms of the Apache 2.0 license.

@Bingjiling Bingjiling changed the title [WIP] feat: Group export feat: Group export scripts Jul 27, 2021
@Bingjiling Bingjiling merged commit d8945f3 into feat-multitenancy Aug 2, 2021
@Bingjiling Bingjiling deleted the group-export branch August 2, 2021 19:19
carvantes added a commit that referenced this pull request Aug 18, 2021
* feat: add tenantId attribute to Cognito user pool (#348)

* feat: remove unneeded scope checks in authorizer (#347)

* feat: update lambda state machine to accommodate tenantId (#367)

* feat: add "enableMultiTenancy" CFN parameter  (#381)

* test: add multi-tenancy integ tests (#387)

* fix: remove _id, _tenantId from bulk export results (#384)

* feat: Group export scripts (#389)

* fix: add multi-tenant metadata route (#392)

* fix: allow more concurrent export jobs for multi-tenant deployments (#397)

* test: integ tests for Group export (#393)

* feat: add ES hard delete config value (#398)

* docs: update postman collection and docs to use Id token  (#399)

* docs: add multi-tenancy docs (#400)


Co-authored-by: Yanyu Zheng <yz2690@columbia.edu>

BREAKING CHANGE: The Cognito IdToken is now used instead of the accessToken to authorize requests.
carvantes pushed a commit that referenced this pull request Aug 19, 2021
* chore: script generating patient compartment search params

* feat: update Glue script for group export

* Upload patient compartment jsons to S3
carvantes added a commit that referenced this pull request Aug 24, 2021
* feat: update lambda state machine to accommodate tenantId (#367)

* feat: add "enableMultiTenancy" CFN parameter (#382)

* fix: pass enableMultiTenancy to ES

* fix: remove _id, _tenantId from bulk export results

* feat: Group export scripts (#389)

* chore: script generating patient compartment search params

* feat: update Glue script for group export

* Upload patient compartment jsons to S3

* fix: allow more concurrent export jobs for multi-tenant deployments (#397)

* feat: add ES hard delete config value (#398)

* docs: add multi-tenancy docs (#400)

* fix: pass enableMultiTenancy flag to s3DataService

* test: add multi-tenancy integ tests (#387)

* test: integ tests for Group export (#393)

* chore: upgrade dependencies

* add public multi-tenant routes

* add system/read and user/delete permissions to defaults

* test: fix tests for smart multi-tenancy

* test: update gh actions to also test multi-tenant environment

* docs: update bulk export docs to mention group export

Co-authored-by: Yanyu Zheng <yz2690@columbia.edu>
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