Merge github.com:/easystats/insight

.github/workflows/R-CMD-check-hard.yaml

@@ -7,8 +7,6 @@
 # never used to avoid accidentally restoring a cache containing a suggested
 # dependency.
 on:
-  push:
-    branches: [main, master]
   pull_request:
     branches: [main, master]
 

.github/workflows/R-CMD-check-main.yaml

@@ -0,0 +1,15 @@
+# Workflow derived from https://github.com/r-lib/actions/tree/v2/examples
+# Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help
+#
+# NOTE: This workflow is overkill for most R packages and
+# check-standard.yaml is likely a better choice.
+# usethis::use_github_action("check-standard") will install it.
+on:
+  push:
+    branches: [main, master]
+
+name: R-CMD-check
+
+jobs:
+  R-CMD-check:
+    uses: easystats/workflows/.github/workflows/R-CMD-check-main.yaml@main

.github/workflows/R-CMD-check-strict.yaml

@@ -3,8 +3,6 @@
 #
 # R CMD Check will fail on a `NOTE`.
 on:
-  push:
-    branches: [main, master]
   pull_request:
     branches: [main, master]
 

.github/workflows/R-CMD-check.yaml

@@ -5,8 +5,6 @@
 # check-standard.yaml is likely a better choice.
 # usethis::use_github_action("check-standard") will install it.
 on:
-  push:
-    branches: [main, master]
   pull_request:
     branches: [main, master]
 

.github/workflows/check-all-examples.yaml

@@ -7,8 +7,6 @@
 #
 # This workflow helps find such failing examples that need to be modified.
 on:
-  push:
-    branches: [main, master]
   pull_request:
     branches: [main, master]
 

.github/workflows/check-link-rot.yaml

@@ -1,6 +1,4 @@
 on:
-  push:
-    branches: [main, master]
   pull_request:
     branches: [main, master]
 

.github/workflows/check-spelling.yaml

@@ -1,6 +1,4 @@
 on:
-  push:
-    branches: [main, master]
   pull_request:
     branches: [main, master]
 

.github/workflows/check-styling.yaml

@@ -1,6 +1,4 @@
 on:
-  push:
-    branches: [main, master]
   pull_request:
     branches: [main, master]
 

.github/workflows/check-test-warnings.yml

@@ -1,7 +1,5 @@
 # Running tests with options(warn = 2) to fail on test warnings
 on:
-  push:
-    branches: [main, master]
   pull_request:
     branches: [main, master]
 

.github/workflows/check-vignette-warnings.yaml

@@ -1,7 +1,5 @@
 # Running tests with options(warn = 2) to fail on test warnings
 on:
-  push:
-    branches: [main, master]
   pull_request:
     branches: [main, master]
 

.github/workflows/html-5-check.yaml

@@ -1,8 +1,6 @@
 # Workflow derived from https://github.com/r-lib/actions/tree/v2/examples
 # Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help
 on:
-  push:
-    branches: [main, master]
   pull_request:
     branches: [main, master]
 

.github/workflows/pkgdown-no-suggests.yaml

@@ -1,6 +1,4 @@
 on:
-  push:
-    branches: [main, master]
   pull_request:
     branches: [main, master]
 

.github/workflows/test-coverage.yaml

@@ -1,8 +1,6 @@
 # Workflow derived from https://github.com/r-lib/actions/tree/v2/examples
 # Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help
 on:
-  push:
-    branches: [main, master]
   pull_request:
     branches: [main, master]
 

CRAN-SUBMISSION

@@ -1,3 +1,3 @@
-Version: 0.19.9
-Date: 2024-03-15 15:07:43 UTC
-SHA: a2cb3065be697a9573a0134258a3fea6c0df3bb9
+Version: 0.20.1
+Date: 2024-06-11 14:53:20 UTC
+SHA: 622b973d4f2c62cb42d6fc4b4c04907533096fcb

DESCRIPTION

@@ -1,7 +1,7 @@
 Type: Package
 Package: insight
 Title: Easy Access to Model Information for Various Model Objects
-Version: 0.19.9.2
+Version: 0.20.1.1
 Authors@R: 
     c(person(given = "Daniel",
              family = "Lüdecke",
@@ -70,19 +70,19 @@ Description: A tool to provide an easy, intuitive and consistent
     used to fit the model or data from response variables. 'insight'
     mainly revolves around two types of functions: Functions that find
     (the names of) information, starting with 'find_', and functions that
-    get the underlying data, starting with 'get_'.  The package has a
+    get the underlying data, starting with 'get_'. The package has a
     consistent syntax and works with many different model objects, where
     otherwise functions to access these information are missing.
 License: GPL-3
 URL: https://easystats.github.io/insight/
 BugReports: https://github.com/easystats/insight/issues
-Depends:
+Depends: 
     R (>= 3.6)
-Imports:
+Imports: 
     methods,
     stats,
     utils
-Suggests:
+Suggests: 
     AER,
     afex,
     aod,
@@ -93,7 +93,7 @@ Suggests:
     betareg,
     bife,
     biglm,
-    blavaan,
+    blavaan (>= 0.5-5),
     blme,
     boot,
     brms,
@@ -129,7 +129,9 @@ Suggests:
     gmnl,
     grDevices,
     gt,
+    httptest2,
     httr,
+    httr2,
     interp,
     ivreg,
     JM,
@@ -142,8 +144,8 @@ Suggests:
     lmtest,
     logistf,
     logitr,
-    MASS,
     marginaleffects,
+    MASS,
     Matrix,
     mclogit,
     mclust,
@@ -156,7 +158,6 @@ Suggests:
     mgcv,
     mice,
     mlogit,
-    mhurdle,
     mmrm,
     modelbased,
     multgee,
@@ -180,9 +181,9 @@ Suggests:
     Rcpp,
     rmarkdown,
     rms,
-    rpart,
     robustbase,
     robustlmm,
+    rpart,
     rstanarm (>= 2.21.1),
     rstantools (>= 2.1.0),
     rstudioapi,
@@ -195,9 +196,9 @@ Suggests:
     survival,
     testthat,
     tinytable (>= 0.1.0),
+    TMB,
     truncreg,
     tweedie,
-    TMB,
     VGAM,
     withr
 VignetteBuilder: 
@@ -208,7 +209,4 @@ RoxygenNote: 7.3.1
 Roxygen: list(markdown = TRUE)
 Config/testthat/edition: 3
 Config/testthat/parallel: true
-Config/Needs/website:
-    rstudio/bslib,
-    r-lib/pkgdown,
-    easystats/easystatstemplate
+Config/Needs/website: easystats/easystatstemplate

NAMESPACE

@@ -342,6 +342,7 @@ S3method(format_ci,bayestestR_ci)
 S3method(format_ci,character)
 S3method(format_ci,data.frame)
 S3method(format_ci,factor)
+S3method(format_ci,logical)
 S3method(format_ci,numeric)
 S3method(format_string,character)
 S3method(format_string,data.frame)
@@ -388,6 +389,7 @@ S3method(get_data,clm2)
 S3method(get_data,clmm)
 S3method(get_data,clmm2)
 S3method(get_data,complmrob)
+S3method(get_data,coxme)
 S3method(get_data,coxph)
 S3method(get_data,cpglmm)
 S3method(get_data,data.frame)

NEWS.md

@@ -1,11 +1,52 @@
+# insight 0.20.2
+
+## General
+
+* Improved accuracy of singularity-checks in `get_variance()`.
+
+# insight 0.20.1
+
+## Bug fixes
+
+* Fixed possible memory allocation issues when the deprecated argument `at` was
+  used in `get_datagrid()`.
+
+# insight 0.20.0
+
+## Breaking
+
+* Arguments named `group`, `at`, `group_by` and `split_by` will be deprecated
+  in future releases of _easystats_ packages. Please use `by` instead. This
+  affects following functions in *insight*:
+
+  * `export_table()`
+  * `get_datagrid()`
+  * `print_parameters()`
+
+## Bug fixes
+
+* Fixed errors in CRAN checks.
+
+# insight 0.19.11
+
+## General
+
+* More informative error message for `get_varcov()` when the requested
+  `vcov`-function failed.
+
+## Bug fixes
+
+* Fixed issue with `get_data()` for `coxme` models when `source` was set to
+  `"modelframe"`.
+
 # insight 0.19.10
 
 ## Bug fixes
 
-* Function like `find_variables()` or `clean_names()` now support multi-membership
+* Functions like `find_variables()` or `clean_names()` now support multi-membership
   formulas for models from *brms*.
 
-* Updated tests to work with the latest changes in *glmmTMBM 1.1.9*.
+* Updated tests to work with the latest changes in *glmmTMB 1.1.9*.
 
 # insight 0.19.9
 
@@ -1397,4 +1438,4 @@
 * Fixed issue in `get_data()` for models with `cbind()`-response variables and
   matrix-like variables in the model frame (e.g. when using `poly()`).
 
-* Fixed issues with `PROreg::BBmm()`, due to changes in latest package update.
+* Fixed issues with `PROreg::BBmm()`, due to changes in latest package update.

R/clean_names.R

@@ -147,7 +147,7 @@ clean_names.character <- function(x, include_names = FALSE, ...) {
         if (grepl("::", x[i], fixed = TRUE)) {
           x[i] <- sub("(.*)::(.*)", "\\2", x[i])
         }
-        if (pattern[j] == "offset") {
+        if (pattern[j] == "offset") { # nolint
           x[i] <- trim_ws(unique(sub("^offset\\(([^-+ )]*).*", "\\1", x[i])))
         } else if (pattern[j] == "I") {
           if (!ignore_asis) x[i] <- trim_ws(unique(sub("I\\(((\\w|\\.)*).*", "\\1", x[i])))

R/compute_variances.R

@@ -12,6 +12,9 @@
   ## Major revisions and adaption to more complex models and other packages
   ## by Daniel Lüdecke
 
+  # needed for singularity check
+  check_if_installed("performance", reason = "to check for singularity")
+
   faminfo <- model_info(x, verbose = FALSE)
 
   if (any(faminfo$family == "truncated_nbinom1")) {
@@ -36,7 +39,7 @@
 
   # Test for non-zero random effects ((near) singularity)
   no_random_variance <- FALSE
-  if (.is_singular(x, vals, tolerance = tolerance) && !(component %in% c("slope", "intercept"))) {
+  if (performance::check_singularity(x, tolerance = tolerance) && !(component %in% c("slope", "intercept"))) {
     if (verbose) {
       format_warning(
         sprintf("Can't compute %s. Some variance components equal zero. Your model may suffer from singularity (see `?lme4::isSingular` and `?performance::check_singularity`).", name_full),