test fix - account for float NaN values & other null as blank / no va…

…riant annotation.
bcgsc · May 12, 2023 · 430205b · 430205b
1 parent 3f300c1
commit 430205b
Showing 1 changed file with 2 additions and 1 deletion.
diff --git a/ipr/annotate.py b/ipr/annotate.py
@@ -11,6 +11,7 @@
 from graphkb.match import INPUT_COPY_CATEGORIES
 from graphkb.types import Variant
 from graphkb.util import FeatureNotFoundError, convert_to_rid_list
+from pandas import isnull
 from progressbar import progressbar
 from typing import Any, Dict, List, Sequence, Set, cast
 
@@ -329,7 +330,7 @@ def annotate_positional_variants(
         for var_key in VARIANT_KEYS:
             variant = row.get(var_key)
             matches = []
-            if not variant:
+            if not variant or isnull(variant):
                 continue
             try:
                 try: