remove tests skipped for github workflow timeouts. Test speedups.

bcgsc · May 16, 2023 · 816dcde · 816dcde
1 parent d84233b
commit 816dcde
Showing 1 changed file with 0 additions and 4 deletions.
diff --git a/tests/test_annotate.py b/tests/test_annotate.py
@@ -72,7 +72,6 @@ def graphkb_conn():
     return graphkb_conn
 
 
-@pytest.mark.skipif(EXCLUDE_INTEGRATION_TESTS, reason="SDEV-3381 - github workflow failures.")
 def test_annotate_nonsense_vs_missense(graphkb_conn):
     """Verify missense (point mutation) is not mistaken for a nonsense (stop codon) mutation."""
     disease = 'cancer'
@@ -84,7 +83,6 @@ def test_annotate_nonsense_vs_missense(graphkb_conn):
         assert matched, f"should have matched in {key}: {TP53_MUT_DICT[key]}"
 
 
-@pytest.mark.skipif(EXCLUDE_INTEGRATION_TESTS, reason="SDEV-3381 - github workflow failures.")
 def test_annotate_nonsense_vs_missense_protein(graphkb_conn):
     """Verify missense (point mutation) is not mistaken for a nonsense (stop codon) mutation."""
     disease = 'cancer'
@@ -96,7 +94,6 @@ def test_annotate_nonsense_vs_missense_protein(graphkb_conn):
         assert matched, f"should have matched in {key}: {TP53_MUT_DICT[key]}"
 
 
-@pytest.mark.skipif(EXCLUDE_INTEGRATION_TESTS, reason="SDEV-3381 - github workflow failures.")
 def test_annotate_structural_variants_tp53(graphkb_conn):
     """Verify alternate TP53 variants match."""
     disease = 'cancer'
@@ -126,7 +123,6 @@ def test_annotate_structural_variants_tp53(graphkb_conn):
         assert not missing, f"{key} missing{missing}: {diff}"
 
 
-@pytest.mark.skipif(EXCLUDE_INTEGRATION_TESTS, reason="SDEV-3381 - github workflow failures.")
 def test_get_therapeutic_associated_genes(graphkb_conn):
     gene_list = get_therapeutic_associated_genes(graphkb_conn=graphkb_conn)
     assert gene_list, 'No get_therapeutic_associated_genes found'