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Make fastq header stripping optional #2
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Big upvote for this. I am currently doing some internal benchmarking of some decontamination processes, but I can't use Hostile as I have no way of assessing the kept reads as I don't know what reads from the original fastq are kept. Assumeably there must be a way of doing this as you assess the accuracy of Hostile in your preprint? |
Hey Michael, thanks for nudging – I'll make this optional after I've
finished lunch and update this issue
…On Wed, 12 Jul 2023 at 05:23, Michael Hall ***@***.***> wrote:
Big upvote for this.
I am currently doing some internal benchmarking of some decontamination
processes, but I can't use Hostile as I have no way of assessing the kept
reads as I don't know what reads from the original fastq are kept.
Assumeably there must be a way of doing this as you assess the accuracy of
Hostile in your preprint?
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Awesome. Thanks @bede. I'll give it a whirl today. |
Works well 👍 |
Great! Thanks and do reach out on here or email if there's anything else. I'll probably make another release next week |
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