refactor: Use collect output in filter/add_column and optional report #139
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jvfe
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Jun 27, 2023
* master: fix: Change create_report back to high_memory refactor: Use collect output in filter/add_column and optional report (#139) refactor: Increase default reqs for ppanggolin and create_report (#137) feat: Check sample ID validity with Annotation input check (#136) feat: Add annotation tools param (#134) docs: Add new ARETE logo (#135) feat: Add param to skip the pan/phylo subwf (#132)
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refactor: Integrate concat and filter matches in one process
refactor: Change image for filter_matches
fix: Change output module name
fix: Correct string interpolation
refactor: Change add column to work with collected output
fix: Change sed regex
fix: Change sed regex
refactor: Make sed expression case-insensitive
Closes Change add_column/filter_matches processes to run with collected output #138