Creating scientific software at http://www.bdi.ox.ac.uk/
Full-time dev on the tskit ecosystem.
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Oxford University
- Oxford, UK
- @benjeffery
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tskit-dev/msprime Public
Simulate genealogical trees and genomic sequence data using population genetic models
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1,154 contributions in the last year
Activity overview
Contribution activity
May 2022
Created 16 commits in 5 repositories
Created 1 repository
- benjeffery/pyodide Python
Created a pull request in pyodide/pyodide that received 12 comments
Add tskit 0.4.1
Description
Add tskit
0.4.1 package and it's two pure-python deps.
No patches to tskit were needed.
Checklists
Add a CHANGELOG entry
Add / updat…
+83
−1
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12
comments
Opened 13 other pull requests in 5 repositories
tskit-dev/tskit
3
open
5
merged
tskit-dev/tsinfer
2
merged
tskit-dev/msprime
1
merged
tskit-dev/tsdate
1
merged
pyodide/pyodide
1
merged
Reviewed 16 pull requests in 2 repositories
tskit-dev/tskit
14 pull requests
- Doc err macros
- C API minor updates
- Sackin C implementation
- Initial framework for balance metrics and tests
- Document options
- Document tree traversals in C
- Decapitate
- Implement and test allele_remap()
- Document tree sequence
- Implementation of allele_remap()
- Add error for taking table with no edge metadata
- Finish documenting tree queries.
- Document remaining node queries.
- Rename int and load flags to common namespace