v1.5.4

v1.5.4 (2024-06-12)

Fix

• fix: License updated to MIT (#119) (6e755dd)

v1.5.3

v1.5.3 (2024-06-10)

Fix

• fix: Clarified license in README.md (#118) (a4899ca)

v1.5.2

v1.5.2 (2024-05-29)

Fix

• fix: upload latest version to pypi (1debad3)

v1.5.1

v1.5.1 (2024-05-29)

Fix

• fix: format toml (269f55d)

v1.5.0

What's Changed

• patch: pushing to 1.4.1 by @skim2257 in #116

Full Changelog: v1.1.0...v1.5.0

v1.4.0

This is an empty release syncing our future PyPI releases with semantic versioning on GitHub.

v1.1.0

v1.1.0 (2024-05-29)

Chore

• chore: bump version (58ec67f)

Feature

• feat: semantic release (#114)

• feat: semantic release

• fix: if statement issue (23a2d70)

Fix

• fix: add codecov badge (f43d042)

• fix: explicit module to track for code coverage (f15d45d)

Unknown

• Dev (#112)

• kill bob the builder

• pip publish without semantic release

• oops

• adding checkout to pip-squeak

• fixed main.yml

• fixed main.yml

• fixed main.yml

• skip autopipeline in pip testing

• adding code coverage

• removed pytest-xdist

• xdist removed, -n flag gone

• fix: explicit module to track for code coverage

• chore: bump version

• removed pytest-xdist

• xdist removed, -n flag gone

• fixing main.yml conflict

---

Co-authored-by: Jermiah Joseph <jermiahjoseph98@gmail.com> (76cea29)

• Dev (#111)

• kill bob the builder

• pip publish without semantic release

• oops

• adding checkout to pip-squeak

• fixed main.yml

• fixed main.yml

• fixed main.yml

• skip autopipeline in pip testing

• adding code coverage

• removed pytest-xdist

• xdist removed, -n flag gone (48fcfd0)

• skip autopipeline in pip testing (054d1b4)

• fixed main.yml (b5b09e7)

• fixed main.yml (560272f)

• fixed main.yml (535a1c5)

• adding checkout to pip-squeak (da6e006)

• oops (8291564)

• pip publish without semantic release (5e3cc39)

• kill bob the builder (5eacc0f)

• Substantial refactoring, linting, CI/CD updates (#107)

• Switching to poetry + ruff

• fixed main.yml

• this will do

• maybe this?

• update lock

• fix: ruff errors

• fix: python version error

• all lint checks pass

• tests should work...

• update pytest version

• new poetry install

• windows ghaction poetry install... work pls

• yml fix

• poetry version=1.8.2

• still fixing main.yml

• maybe it's poetry?

• oh boy!

• kill old unit test ci/cd

• update ci/cd badge

---

Co-authored-by: Jermiah Joseph <jermiahjoseph98@gmail.com> (6ddc645)

• New tests, improving code coverage. (#105)

• new_tests_in_progress

• Added majority coverage for imgtools.ops.

• updated main-ci.yml with dataset-check.py name change. (c2e8ddb)

• Mit lite (#104)

• Detached branch (#94)

• v1.2.0 for lighter install.

• update main-ci.yml

• fixed test_dataset

• added zipfile and request

• added torch and torchio

• added missing dep in main-ci

• Detached branch (#94)

• v1.2.0 for lighter install.

• update main-ci.yml

• fixed test_dataset

• updated PyPI push with API key

• build-pkg pls work

• pypi changes

• no egg please

• hm

• remove dataset dependency. to be reconciled later

• 1.2.0.1 hopefully fixed

• main-ci removed test_dataset

• readding scikit-learn

• push to 1.2.0.2 (9137965)

• Mit lite (#103)

• Detached branch (#94)

• v1.2.0 for lighter install.

• update main-ci.yml

• fixed test_dataset

• added zipfile and request

• added torch and torchio

• added missing dep in main-ci

• Detached branch (#94)

• v1.2.0 for lighter install.

• update main-ci.yml

• fixed test_dataset

• updated PyPI push with API key

• build-pkg pls work

• pypi changes

• no egg please

• hm

• remove dataset dependency. to be reconciled later

• 1.2.0.1 hopefully fixed

• main-ci removed test_dataset

• readding scikit-learn (4b06915)

• MIT lite (#102)

• Detached branch (#94)

• v1.2.0 for lighter install.

• update main-ci.yml

• fixed test_dataset

• added zipfile and request

• added torch and torchio

• added missing dep in main-ci

• Detached branch (#94)

• v1.2.0 for lighter install.

• update main-ci.yml

• fixed test_dataset

• updated PyPI push with API key

• build-pkg pls work

• pypi changes

• no egg please

• hm

• remove dataset dependency. to be reconciled later

• 1.2.0.1 hopefully fixed

• main-ci removed test_dataset (535bff0)

• Mit lite (#101)

• Detached branch (#94)

• v1.2.0 for lighter install.

• update main-ci.yml

• fixed test_dataset

• added zipfile and request

• added torch and torchio

• added missing dep in main-ci

• Detached branch (#94)

• v1.2.0 for lighter install.

• update main-ci.yml

• fixed test_dataset

• updated PyPI push with API key

• build-pkg pls work

• pypi changes

• no egg please

• hm (e378eea)

• Mit lite (#100)

• Detached branch (#94)

• v1.2.0 for lighter install.

• update main-ci.yml

• fixed test_dataset

• added zipfile and request

• added torch and torchio

• added missing dep in main-ci

• Detached branch (#94)

• v1.2.0 for lighter install.

• update main-ci.yml

• fixed test_dataset

• updated PyPI push with API key

• build-pkg pls work

• pypi changes

• no egg please (3df6f2c)

• Mit lite (#99)

• Detached branch (#94)

• v1.2.0 for lighter install.

• update main-ci.yml

• fixed test_dataset

• added zipfile and request

• added torch and torchio

• added missing dep in main-ci

• Detached branch (#94)

• v1.2.0 for lighter install.

• update main-ci.yml

• fixed test_dataset

• updated PyPI push with API key

• build-pkg pls work

• pypi changes (92da301)

• Mit lite (#98)

• Detached branch (#94)

• v1.2.0 for lighter install.

• update main-ci.yml

• fixed test_dataset

• added zipfile and request

• added torch and torchio

• added missing dep in main-ci

• Detached branch (#94)

• v1.2.0 for lighter install.

• update main-ci.yml

• fixed test_dataset

• updated PyPI push with API key

• build-pkg pls work (7dfca09)

• Mit lite (#97)

• Detached branch (#94)

• v1.2.0 for lighter install.

• update main-ci.yml

• fixed test_dataset

• added zipfile and request

• added torch and torchio

• added missing dep in main-ci

• Detached branch (#94)

• v1.2.0 for lighter install.

• update main-ci.yml

• fixed test_dataset

• updated PyPI push with API key (07dad6c)

• Mit lite (#96)

• Detached branch (#94)

• v1.2.0 for lighter install.

• update main-ci.yml

• fixed test_dataset

• added zipfile and request

• added torch and torchio (afea698)

• Detached branch (#94) (#95)

• Detached branch (#94)

• v1.2.0 for lighter install.

• update main-ci.yml

• fixed test_dataset

• added zipfile and request (88857bf)

• updated actions to new default branch. 'master' branch is DEPRECATED (d10b5ba)

• updated version and default branch to 'main' (8784b5f)

• Flake8 linting fixes (#93)

• add stop_before_pixels tag and set to True to speed up dcm reads

• add ct-seg support

• flake8 linting fixes

• flake8 linting fixes transforms

---

Co-authored-by: Umar Yousafzai <umaryousafzai54@gmail.com> (43a72fe)

• convert to dicom (#89)

nifti to dicom function (ba50037)

• test break during demo (#81)

• test break during demo

• changed https://github.com/bhklab/med-imagetools/blob/d99950f4240ec286deeef6d635fe329ca520f2a7/imgtools/modules/datagraph.py#L61 set 2nd half pandasastype(str)

• Update setup....

v1.0.3 - F1000Research Archive

Subseries (#61)

* subseries implementation step 1

* Fixes for issues #57, #53.

* update README.

* fixed pytest error