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Expose transform/transmute in Java/Python/R #1615

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fnothaft opened this issue Jul 21, 2017 · 0 comments
Closed

Expose transform/transmute in Java/Python/R #1615

fnothaft opened this issue Jul 21, 2017 · 0 comments
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@fnothaft
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enhancement
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0.23.0

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Another one that I realized that we're missing and that should be straightforward after #1613.
@fnothaft fnothaft added this to the 0.23.0 milestone Jul 21, 2017
@fnothaft fnothaft self-assigned this Jul 21, 2017
fnothaft added a commit to fnothaft/adam that referenced this issue Jul 24, 2017
@fnothaft
[ADAM-1615] Add transform and transmute APIs to Java, R, and Python
028612b 
Resolves bigdatagenomics#1615. Adds `GenomicDatasetConversion` class to adam-core API, along
with accompanying implementations in `org.bdgenomics.adam.api.java` package.
Adds `transformDataFrame` and `transmuteDataFrame` to `GenomicRDD` API. To
enable use from Python and R, we provide a `DataFrameConversionWrapper` that
wraps the product of an R/Python function in a Spark Java API `Function`.
fnothaft added a commit to fnothaft/adam that referenced this issue Jul 24, 2017
@fnothaft
[ADAM-1615] Add transform and transmute APIs to Java, R, and Python
c96deda 
Resolves bigdatagenomics#1615. Adds `GenomicDatasetConversion` class to adam-core API, along
with accompanying implementations in `org.bdgenomics.adam.api.java` package.
Adds `transformDataFrame` and `transmuteDataFrame` to `GenomicRDD` API. To
enable use from Python and R, we provide a `DataFrameConversionWrapper` that
wraps the product of an R/Python function in a Spark Java API `Function`.
@fnothaft fnothaft mentioned this issue Jul 24, 2017
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fnothaft added a commit to fnothaft/adam that referenced this issue Aug 2, 2017
@fnothaft
[ADAM-1615] Add transform and transmute APIs to Java, R, and Python
199a6be 
Resolves bigdatagenomics#1615. Adds `GenomicDatasetConversion` class to adam-core API, along
with accompanying implementations in `org.bdgenomics.adam.api.java` package.
Adds `transformDataFrame` and `transmuteDataFrame` to `GenomicRDD` API. To
enable use from Python and R, we provide a `DataFrameConversionWrapper` that
wraps the product of an R/Python function in a Spark Java API `Function`.
heuermh pushed a commit that referenced this issue Aug 2, 2017
@fnothaft @heuermh
[ADAM-1615] Add transform and transmute APIs to Java, R, and Python
544f78e 
Resolves #1615. Adds `GenomicDatasetConversion` class to adam-core API, along
with accompanying implementations in `org.bdgenomics.adam.api.java` package.
Adds `transformDataFrame` and `transmuteDataFrame` to `GenomicRDD` API. To
enable use from Python and R, we provide a `DataFrameConversionWrapper` that
wraps the product of an R/Python function in a Spark Java API `Function`.
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