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Expose transform/transmute in Java/Python/R #1615

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fnothaft opened this Issue Jul 21, 2017 · 0 comments

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fnothaft commented Jul 21, 2017

Another one that I realized that we're missing and that should be straightforward after #1613.

@fnothaft fnothaft added this to the 0.23.0 milestone Jul 21, 2017

@fnothaft fnothaft self-assigned this Jul 21, 2017

fnothaft added a commit to fnothaft/adam that referenced this issue Jul 24, 2017

[ADAM-1615] Add transform and transmute APIs to Java, R, and Python
Resolves bigdatagenomics#1615. Adds `GenomicDatasetConversion` class to adam-core API, along
with accompanying implementations in `org.bdgenomics.adam.api.java` package.
Adds `transformDataFrame` and `transmuteDataFrame` to `GenomicRDD` API. To
enable use from Python and R, we provide a `DataFrameConversionWrapper` that
wraps the product of an R/Python function in a Spark Java API `Function`.

fnothaft added a commit to fnothaft/adam that referenced this issue Jul 24, 2017

[ADAM-1615] Add transform and transmute APIs to Java, R, and Python
Resolves bigdatagenomics#1615. Adds `GenomicDatasetConversion` class to adam-core API, along
with accompanying implementations in `org.bdgenomics.adam.api.java` package.
Adds `transformDataFrame` and `transmuteDataFrame` to `GenomicRDD` API. To
enable use from Python and R, we provide a `DataFrameConversionWrapper` that
wraps the product of an R/Python function in a Spark Java API `Function`.

fnothaft added a commit to fnothaft/adam that referenced this issue Aug 2, 2017

[ADAM-1615] Add transform and transmute APIs to Java, R, and Python
Resolves bigdatagenomics#1615. Adds `GenomicDatasetConversion` class to adam-core API, along
with accompanying implementations in `org.bdgenomics.adam.api.java` package.
Adds `transformDataFrame` and `transmuteDataFrame` to `GenomicRDD` API. To
enable use from Python and R, we provide a `DataFrameConversionWrapper` that
wraps the product of an R/Python function in a Spark Java API `Function`.

@heuermh heuermh closed this in #1627 Aug 2, 2017

heuermh added a commit that referenced this issue Aug 2, 2017

[ADAM-1615] Add transform and transmute APIs to Java, R, and Python
Resolves #1615. Adds `GenomicDatasetConversion` class to adam-core API, along
with accompanying implementations in `org.bdgenomics.adam.api.java` package.
Adds `transformDataFrame` and `transmuteDataFrame` to `GenomicRDD` API. To
enable use from Python and R, we provide a `DataFrameConversionWrapper` that
wraps the product of an R/Python function in a Spark Java API `Function`.

@heuermh heuermh added this to Completed in Release 0.23.0 Jan 4, 2018

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