Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Merge VariantAnnotation and DatabaseVariantAnnotation records #1250

Closed
wants to merge 12 commits into from
Closed

Merge VariantAnnotation and DatabaseVariantAnnotation records #1250

wants to merge 12 commits into from

Commits on Nov 3, 2016

  1. Bump to bdg-formats 0.10.0-SNAPSHOT.

    @fnothaft
    fnothaft committed Nov 3, 2016
    Configuration menu
    Copy the full SHA
    80f9557 View commit details
    Browse the repository at this point in the history

  2. Update for bdg-formats code style changes (bigdatagenomics#1126)

    @heuermh @fnothaft
    heuermh authored and fnothaft committed Nov 3, 2016
    Configuration menu
    Copy the full SHA
    5c30085 View commit details
    Browse the repository at this point in the history

  3. Remove StructuralVariant and StructuralVariantType, add names field t… 

    …o Variant
    @heuermh @fnothaft
    heuermh authored and fnothaft committed Nov 3, 2016
    Configuration menu
    Copy the full SHA
    12f245c View commit details
    Browse the repository at this point in the history

Commits on Nov 8, 2016

  1. Merge VariantAnnotation and DatabaseVariantAnnotation records

    @heuermh
    heuermh committed Nov 8, 2016
    Configuration menu
    Copy the full SHA
    8c18150 View commit details
    Browse the repository at this point in the history

  2. Add variant filter fields for projection

    @heuermh
    heuermh committed Nov 8, 2016
    Configuration menu
    Copy the full SHA
    028b245 View commit details
    Browse the repository at this point in the history

  3. Register read, sequence, and slice schema records

    @heuermh
    heuermh committed Nov 8, 2016
    Configuration menu
    Copy the full SHA
    b3e3438 View commit details
    Browse the repository at this point in the history

  4. Support validation stringency when parsing VCF ANN attribute values

    @heuermh
    heuermh committed Nov 8, 2016
    Configuration menu
    Copy the full SHA
    b43a252 View commit details
    Browse the repository at this point in the history

  5. Address some review comments

    @heuermh
    heuermh committed Nov 8, 2016
    Configuration menu
    Copy the full SHA
    9b33c81 View commit details
    Browse the repository at this point in the history

Commits on Nov 10, 2016

  1. fix typo

    @heuermh
    heuermh committed Nov 10, 2016
    Configuration menu
    Copy the full SHA
    bcb92e7 View commit details
    Browse the repository at this point in the history

Commits on Nov 11, 2016

  1. Implement separate variant and genotype filters; rename VariantContex… 

    …t.databases field
    @heuermh
    heuermh committed Nov 11, 2016
    Configuration menu
    Copy the full SHA
    c799092 View commit details
    Browse the repository at this point in the history

  2. Update bdg-formats dependency version to 0.10.0

    @heuermh
    heuermh committed Nov 11, 2016
    Configuration menu
    Copy the full SHA
    bd15743 View commit details
    Browse the repository at this point in the history

Commits on Nov 15, 2016

  1. Add additional unit tests around conversion to VCF ANN string value

    @heuermh
    heuermh committed Nov 15, 2016
    Configuration menu
    Copy the full SHA
    95c4107 View commit details
    Browse the repository at this point in the history