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[AVOCADO-293] Use Spark SQL to filter variants prior to squaring off. #294

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fnothaft
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Resolves #293.

@fnothaft fnothaft added this to the 0.2.0 milestone Feb 18, 2018
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coveralls commented Feb 18, 2018

Coverage Status

Coverage decreased (-0.08%) to 79.929% when pulling 68cf237 on fnothaft:issues/293-spark-sql-variants-jg into 78f71e1 on bigdatagenomics:master.

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@coveralls
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Coverage Status

Coverage decreased (-0.08%) to 79.929% when pulling 68cf237 on fnothaft:issues/293-spark-sql-variants-jg into 78f71e1 on bigdatagenomics:master.

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Test PASSed.
Refer to this link for build results (access rights to CI server needed):
https://amplab.cs.berkeley.edu/jenkins//job/avocado-prb/230/
Test PASSed.

@fnothaft fnothaft merged commit e0979dd into bigdatagenomics:master Feb 18, 2018
@fnothaft fnothaft deleted the issues/293-spark-sql-variants-jg branch February 18, 2018 22:49
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