Scripts that Bio2RDF users have created to generate RDF versions of scientific datasets
Java PHP HTML Ruby Web Ontology Language Shell Other
Latest commit b04a2f2 Jul 25, 2016 @micheldumontier micheldumontier committed on GitHub Merge pull request #444 from micheldumontier/master
changes around the board
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affymetrix update Nov 24, 2015
biomodels fixed change in remote download location Sep 11, 2013
bioportal
chembl merged release3 Feb 2, 2016
clinicaltrials edit clinicaltrials.php to trigger empty files Jan 30, 2016
common
ctd
dbpedia adding minor changes Apr 19, 2012
dbsnp
drugbank use Bio2RDF's GO to replace labels with codes #431 Mar 29, 2016
genage updated genage parser Nov 30, 2015
genbank added describe individual to reference section Aug 15, 2013
gendr removed automatic processing of gendr gene expression data, which req… Dec 1, 2015
goa
hgnc
homologene
interpro
ipi removed old parsers Aug 23, 2013
iproclass
irefindex simplify column id and includes a column fix for aliases Jul 22, 2016
kegg fixed multi entry parsing error #432 Mar 29, 2016
linkedSPLs add enclosed by to pgx ontoloy map load command Dec 2, 2015
lsr update May 27, 2015
mesh no parsing of supplemental records that lack id and name (only a few) Dec 1, 2015
mgi accomodating current bug in mgi sequence data file; added a few more … Oct 8, 2015
miriam
ncbigene use limited set of organisms by default for ncbigene Dec 4, 2015
ndc
omim
orphanet
pathwaycommons Finished updating pathwaycommons to release 3 Aug 12, 2013
pdb fixed uri encoding bug Mar 16, 2015
pharmgkb
pubchem 2 updates to CTD, NCBI Gene, PubChem, PubMed, SABIO-RK and SGD script… Aug 8, 2013
pubmed
refseq
sabiork
sgd
sider
statistics
taxonomy
toxkb
uniprot
unists added new r3 parser Aug 15, 2013
wormbase update for ws249 Sep 16, 2015
.gitignore untrack xml outputs Mar 5, 2015
MIT-LICENSE.txt Update MIT-LICENSE.txt Jan 24, 2014
README.md Update README.md May 13, 2016
runparser.php

README.md

Bio2RDF-scripts

This Git repository holds all of the RDF converter scripts used to generate Bio2RDF linked data.

Requirements

See the wiki for details.


Licensed under MIT License, see license page for details.