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Scripts that Bio2RDF users have created to generate RDF versions of scientific datasets http://bio2rdf.org/
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affymetrix
biomodels
bioportal
chembl
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common
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dbpedia
dbsnp
drugbank
genage updated genage parser
genbank
gendr
goa removed pdb and uniprot from list, captured missing associations
hgnc
homologene
interpro
ipi
iproclass
irefindex
kegg
linkedSPLs
lsr
mesh
mgi
miriam
ncbigene
ndc
omim
orphanet added dataset description
pathwaycommons
pdb
pharmgkb
pubchem 2 updates to CTD, NCBI Gene, PubChem, PubMed, SABIO-RK and SGD script…
pubmed
refseq replaced deprecated split with explode; added passive ftp connection
sabiork
sgd
sider
statistics
taxonomy
toxkb
uniprot
unists
wormbase
.gitignore
MIT-LICENSE.txt
README.md
runparser.php removed redundant parameter

README.md

Bio2RDF-scripts

This Git repository holds all of the RDF converter scripts used to generate Bio2RDF linked data.

Requirements

The majority of these scripts were created so as to run on Linux servers. Depending on the script you wish to run you will need:

The Bio2RDF API should be installed in the root directory of the project tree (i.e sibling to bio2rdf-scripts).

Usage

Each script is run independently. See README files inside each script directory.

Contact Us

For more information visit http://bio2rdf.org or http://dumontierlab.com


Licensed under MIT License, see license page for details.

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