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Scripts that Bio2RDF users have created to generate RDF versions of scientific datasets
Java PHP HTML Ruby Web Ontology Language Python Other
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affymetrix single file output
biomodels fixed change in remote download location
bioportal fixed to identify owl vs obo, even when incorrect filename
chembl fixed wrong variable name
clinicaltrials various fixes for clinicaltrials
common reimport; required for sgd
ctd fixed qname error
dbpedia adding minor changes
dbsnp process other snp lists
drugbank drugbank nested element fix
genage fixed changes in columns; changed type uris; added annotations
genbank added describe individual to reference section
gendr fixed bug in variable name;added dashes for types, and annotations
goa removed pdb and uniprot from list, captured missing associations
hgnc added extra vega column to hgnc parser
homologene fixed output file name
interpro Update interpro.php
ipi removed old parsers
iproclass added counter
irefindex readding
kegg recover if pathway kgml file can't be loaded
linkedSPLs finished full update for prescription drugs - SPLs 09262015
lsr update
mesh added dataset description to mesh
mgi added genotype string for allele disease associations
miriam initial import
ncbigene Merge branch 'release3' of…
ndc changed to single file output
omim filelisting fix
orphanet added dataset description
pathwaycommons Finished updating pathwaycommons to release 3
pdb fixed uri encoding bug
pharmgkb xref fixes for pharmgkb
pubchem 2 updates to CTD, NCBI Gene, PubChem, PubMed, SABIO-RK and SGD script…
pubmed up
refseq quick fix for uniprotkb/swiss-prot dbxref parse problem #416
sabiork fixed bug in local file location
sgd added domain mappings; changed default bioportal ontology location
sider fixed x predicate
statistics Merge branch 'release3' of…
taxonomy fixed seealso bug
toxkb forgot to commit change of pubchem to pubchem_compound namespace
uniprot updated: requires a destination folder as a parameter for the download
unists added new r3 parser
wormbase update for ws249
.gitignore untrack xml outputs
runparser.php removed redundant parameter
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