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BoNesis - Boolean Network synthesis

Synthesis of Most Permissive Boolean Networks from network architecture and dynamical properties

DISCLAIMER - Legal warning: the use, sharing, and modification of this program and library is allowed for ACADEMIC PURPOSE ONLY. Please contact loic.pauleve@labri.fr for other usage.

Main related publications

  • Synthesis of Boolean Networks from Biological Dynamical Constraints using Answer-Set Programming (S Chevalier, C Froidevaux, L Paulevé, A Zinovyev). In 2019 IEEE 31st International Conference on Tools with Artificial Intelligence (ICTAI), 34–41. Portland, Oregon, United States, 2019. IEEE. doi:10.1109/ICTAI.2019.00014
  • Synthesis and Simulation of Ensembles of Boolean Networks for Cell Fate Decision (S Chevalier, V Noël, L Calzone, A Zinovyev, L Paulevé) In 18th International Conference on Computational Methods in Systems Biology (CMSB). Online, Germany, 2020. Preprint at https://hal.archives-ouvertes.fr/hal-02898849/file/cmsb2020.pdf

Installation

Using pip

pip install bonesis

Using conda

conda install -c potassco -c colomoto bonesis

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Synthesis of Most Permissive Boolean Networks from network architecture and dynamical properties

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