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Hi,
I have a tree file in Newick format for which I have to create phylogenetic tree visualization. I created the annotation file as mentioned in the examples gut_microbiome and I took references from other examples too. After creating the annotation file the options that I mentioned which include colors for specific clades and ring options are not getting generated in the image. I don't see any colors in the image. only the global tree options like change_marker_size, Title, clade_separation, are working. The specific clade options are not working. I installed all the dependencies correctly. I installed Graphlan using pip. What should I do to make the other options work and the colors to be generated in the image? I have attached the annotation file I created for your reference.
Thank you for creating this issue.
We currently field issues through our bioBakery Discourse Support Forum.
If you would please post the issue to discourse we would be happy to sync up with you to get it resolved.
Thank you for creating this issue.
We currently field issues through our bioBakery Discourse Support Forum.
If you would please post the issue to discourse we would be happy to sync up with you to get it resolved.
Hi,
I have a tree file in Newick format for which I have to create phylogenetic tree visualization. I created the annotation file as mentioned in the examples gut_microbiome and I took references from other examples too. After creating the annotation file the options that I mentioned which include colors for specific clades and ring options are not getting generated in the image. I don't see any colors in the image. only the global tree options like change_marker_size, Title, clade_separation, are working. The specific clade options are not working. I installed all the dependencies correctly. I installed Graphlan using pip. What should I do to make the other options work and the colors to be generated in the image? I have attached the annotation file I created for your reference.
Thank you
Stanlley Titus
taxonomy.txt
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