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Add support for selenoproteins #36

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andreasprlic opened this issue Apr 27, 2022 · 0 comments
Closed

Add support for selenoproteins #36

andreasprlic opened this issue Apr 27, 2022 · 0 comments

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@andreasprlic
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bioutils currently does not support selenoproteins. It would be great to be able to add it to the codon translation table (technically it is already there, but maps to "") . We prob want to have a different translation table that maps the stop codon to SEC / U. Also add support for the alternate translation table as an option to translate_cds.

Finally I don't think that sequences.py has any test coverage. Add some bare bones unit tests for the newly added features.
andreasprlic added a commit to andreasprlic/bioutils that referenced this issue Apr 28, 2022
@andreasprlic
fix biocommons#36 by adding a new translation table that adds support…
17be4e4 
… for SEC/U to the translation table
@reece reece closed this as completed in b5d4d0f May 4, 2022
reece added a commit that referenced this issue May 4, 2022
@reece
Fix test warnings and a new failure from #36
22b5556
@reece reece mentioned this issue May 4, 2022
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This was referenced Jul 6, 2023
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