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let valet use only one thread for samtools sort #23441

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bernt-matthias
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@bernt-matthias bernt-matthias commented Jul 29, 2020

with -@ 16 I get samtools sort: couldn't allocate memory for bam_mem

seem better anyway with restrictive HPC setups

reported upstream marbl/VALET#12

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with `-@ 16` I get `samtools sort: couldn't allocate memory for bam_mem`

seem better anyway with restrictive HPC setups
@bernt-matthias
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@BiocondaBot please fetch artifacts

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Package(s) built on CircleCI are ready for inspection:

Arch Package Repodata
noarch valet-1.0-3.tar.bz2 repodata.json

You may also use conda to install these:

  • For packages on noarch:
conda install -c https://117902-42372094-gh.circle-artifacts.com/0/tmp/artifacts/packages <package name>

Docker image(s) built:

Package Tag Install with docker
valet 1.0--3
showcurl "https://117902-42372094-gh.circle-artifacts.com/0/tmp/artifacts/images/valet%3A1.0--3.tar.gz" | gzip -dc | docker load

@bernt-matthias
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@BiocondaBot please add label

@BiocondaBot BiocondaBot added the please review & merge set to ask for merge label Jul 29, 2020
bernt-matthias added a commit to bernt-matthias/tools-iuc that referenced this pull request Jul 29, 2020
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@bioconda-bot please merge

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I will attempt to upload artifacts and merge this PR. This may take some time, please have patience.

@BiocondaBot BiocondaBot merged commit 261d4ba into bioconda:master Jul 29, 2020
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