add igblast-1.4.0 package from NCBI #5
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I think we will soon have a hook based on Ryan's and Brad's work in the other pull request. |
johanneskoester
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Sep 29, 2015
add igblast-1.4.0 package from NCBI
RomainFeron
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Aug 13, 2019
RomainFeron
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Aug 13, 2019
RomainFeron
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Aug 15, 2019
RomainFeron
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Aug 15, 2019
dpryan79
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Aug 16, 2019
* First attempt at a recipe for PhyloCSF * Reset build number to 0; Added basic test; Added license (CLI round 1 errors) * Lowercased package name (CLI round 2) * changed folder name to match package name (CLI round 3) * Added manual download and compiling of Opam * Added wget as requirement * Added opam setup step * Attempt to fix opam install process: added unzip and glpk dependencies, build without sandboxing * test with g++ instead of gcc * Fix attempt for missing solver * Second attempt at c++ compiler * Added messages for better debugging * Attempt to change opam install mode to binaries * It works locally now ... * Forgot to revert curl to wget ... * Added -y option to opam install * Fix attempt for OCaml package compiling bugs * Second fix attempt for OCaml package compiling bugs * Debugging gsl-conf + see if I can remove some dependencies * Debugging gsl-conf #2 * Debugging gsl-conf #3 * Debugging gsl-conf #4 * Debugging gsl-conf #5 * Debugging gsl-conf #5 * Debugging gsl-conf #6 * Cleaned up, small test * Checking output from pkg-config gsl * Checking output from pkg-config gsl - 2 * Checking output from pkg-config gsl - 3 * Test with pkg-config * Testing pkgconfig path + removed exporting ld path * More pkg-config testing * More pkg-config testing * More pkg-config testing * More pkg-config testing * Testing after candidate fixs * Cleaned up recipe after successful tests for GSL, added ocamlfind package to opam * Updated PhyloCSF archive to new release that fixes makefile for new compilers * Cleanup, candidate for final recipe 1 * Added gsl to runtime to fix missing gsl shared library in tests * Removed the accidental 0 that I added at the end of build.sh ... * Added test files to source_files in metal.yaml test section * Manually moved file required for test in bin, less clean but otherwise mulled-build fails as test file is missing * woops * Fix attempt for test file * Removed test as it required a file and failed in mulled-build since the file was not present * I don't know why tests are failing * Removed test at the moment * First attempt at implementing tests properly * Second attempt at implementing tests properly * Updated test * Trying to understand testing environment * Test with * Test with 2 * Test with PREFIX 3 * Tentative fix to build on OSX * First attempt at a recipe for PhyloCSF * Reset build number to 0; Added basic test; Added license (CLI round 1 errors) * Lowercased package name (CLI round 2) * changed folder name to match package name (CLI round 3) * Added manual download and compiling of Opam * Added wget as requirement * Added opam setup step * Attempt to fix opam install process: added unzip and glpk dependencies, build without sandboxing * test with g++ instead of gcc * Fix attempt for missing solver * Second attempt at c++ compiler * Added messages for better debugging * Attempt to change opam install mode to binaries * It works locally now ... * Forgot to revert curl to wget ... * Added -y option to opam install * Fix attempt for OCaml package compiling bugs * Second fix attempt for OCaml package compiling bugs * Debugging gsl-conf + see if I can remove some dependencies * Debugging gsl-conf #2 * Debugging gsl-conf #3 * Debugging gsl-conf #4 * Debugging gsl-conf #5 * Debugging gsl-conf #5 * Debugging gsl-conf #6 * Cleaned up, small test * Checking output from pkg-config gsl * Checking output from pkg-config gsl - 2 * Checking output from pkg-config gsl - 3 * Test with pkg-config * Testing pkgconfig path + removed exporting ld path * More pkg-config testing * More pkg-config testing * More pkg-config testing * More pkg-config testing * Testing after candidate fixs * Cleaned up recipe after successful tests for GSL, added ocamlfind package to opam * Updated PhyloCSF archive to new release that fixes makefile for new compilers * Cleanup, candidate for final recipe 1 * Added gsl to runtime to fix missing gsl shared library in tests * Removed the accidental 0 that I added at the end of build.sh ... * Added test files to source_files in metal.yaml test section * Manually moved file required for test in bin, less clean but otherwise mulled-build fails as test file is missing * woops * Fix attempt for test file * Removed test as it required a file and failed in mulled-build since the file was not present * I don't know why tests are failing * Removed test at the moment * First attempt at implementing tests properly * Second attempt at implementing tests properly * Updated test * Trying to understand testing environment * Test with * Test with 2 * Test with PREFIX 3 * Tentative fix to build on OSX * Update meta.yaml
BiocondaBot
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Jan 18, 2020
Merge PR #19810, commits were: * add abricate * Merge pull request #6 from liaochenlanruo/master update pgcgap branch * Merge pull request #5 from bioconda/master update local files * add gubbins 2.3.4 * Update meta.yaml * Update meta.yaml * Update meta.yaml * add gubbins 2.3.4 * add gubbins * combination of roary and orthofinder * Update meta.yaml * Merge pull request #4 from liaochenlanruo/master update local branch * Merge pull request #3 from bioconda/master update local fork * Merge pull request #2 from bioconda/master update fork * Update meta.yaml * Update meta.yaml * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge pull request #1 from bioconda/master update local recipes
jvanheld
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Jan 21, 2020
Merge PR bioconda#19810, commits were: * add abricate * Merge pull request bioconda#6 from liaochenlanruo/master update pgcgap branch * Merge pull request bioconda#5 from bioconda/master update local files * add gubbins 2.3.4 * Update meta.yaml * Update meta.yaml * Update meta.yaml * add gubbins 2.3.4 * add gubbins * combination of roary and orthofinder * Update meta.yaml * Merge pull request bioconda#4 from liaochenlanruo/master update local branch * Merge pull request bioconda#3 from bioconda/master update local fork * Merge pull request bioconda#2 from bioconda/master update fork * Update meta.yaml * Update meta.yaml * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge pull request bioconda#1 from bioconda/master update local recipes
BiocondaBot
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Jan 23, 2020
Merge PR #19905, commits were: * Merge branch 'master' into pgcgap * update pgcgap to v1.0.10 * add abricate * Merge pull request #6 from liaochenlanruo/master update pgcgap branch * Merge pull request #5 from bioconda/master update local files * add gubbins 2.3.4 * Update meta.yaml * Update meta.yaml * Update meta.yaml * add gubbins 2.3.4 * add gubbins * combination of roary and orthofinder * Update meta.yaml * Merge pull request #4 from liaochenlanruo/master update local branch * Merge pull request #3 from bioconda/master update local fork * Merge pull request #2 from bioconda/master update fork * Update meta.yaml * Update meta.yaml * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge pull request #1 from bioconda/master update local recipes
BiocondaBot
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Jan 24, 2020
Merge PR #13363, commits were: * Update meta.yaml * Merge branch 'master' into intlim * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of github.com:abotzki/bioconda-recipes * Merge pull request #6 from bioconda/master merge from bioconda master * some cleanups * build requirements removed and LICENSE.txt added * Merge branch 'master' of github.com:abotzki/bioconda-recipes * Merge pull request #5 from bioconda/master merge from bioconda master * Merge pull request #4 from bioconda/master merge from bioconda master * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes into intlim * Merge branch 'master' of github.com:abotzki/bioconda-recipes into intlim * Merge pull request #3 from bioconda/master merge from bioconda * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes into intlim * correct URL and license * add missing packages * typo corrected * Merge branch 'master' of github.com:abotzki/bioconda-recipes into intlim * Merge pull request #2 from bioconda/master merge from bioconda master * add initial version of intlim * scikit-learn added * noarch section added * new recipe mofapy * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge pull request #1 from bioconda/master merge from master
BiocondaBot
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Mar 10, 2020
Merge PR #20792, commits were: * Update meta.yaml * Merge branch 'master' into pgcgap * Update PGCGAP to v1.0.11 * Merge branch 'pgcgap' of https://github.com/liaochenlanruo/bioconda-recipes into pgcgap * canu>=1.8 * Merge branch 'master' into pgcgap * Update meta.yaml * add modeltest-ng and raxml-ng * Merge branch 'master' into pgcgap * add circlator and unicycler * Merge branch 'master' into pgcgap * update pgcgap to v1.0.10 * add abricate * Merge pull request #6 from liaochenlanruo/master update pgcgap branch * Merge pull request #5 from bioconda/master update local files * add gubbins 2.3.4 * Update meta.yaml * Update meta.yaml * Update meta.yaml * add gubbins 2.3.4 * add gubbins * combination of roary and orthofinder * Update meta.yaml * Merge pull request #4 from liaochenlanruo/master update local branch * Merge pull request #3 from bioconda/master update local fork * Merge pull request #2 from bioconda/master update fork * Update meta.yaml * Update meta.yaml * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge pull request #1 from bioconda/master update local recipes
BiocondaBot
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Mar 24, 2020
Merge PR #21021, commits were: * Update meta.yaml * Merge branch 'master' into pgcgap * Update PGCGAP to v1.0.11 * Merge branch 'pgcgap' of https://github.com/liaochenlanruo/bioconda-recipes into pgcgap * canu>=1.8 * Merge branch 'master' into pgcgap * Update meta.yaml * add modeltest-ng and raxml-ng * Merge branch 'master' into pgcgap * add circlator and unicycler * Merge branch 'master' into pgcgap * update pgcgap to v1.0.10 * add abricate * Merge pull request #6 from liaochenlanruo/master update pgcgap branch * Merge pull request #5 from bioconda/master update local files * add gubbins 2.3.4 * Update meta.yaml * Update meta.yaml * Update meta.yaml * add gubbins 2.3.4 * add gubbins * combination of roary and orthofinder * Update meta.yaml * Merge pull request #4 from liaochenlanruo/master update local branch * Merge pull request #3 from bioconda/master update local fork * Merge pull request #2 from bioconda/master update fork * Update meta.yaml * Update meta.yaml * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge pull request #1 from bioconda/master update local recipes
BiocondaBot
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Mar 24, 2020
Merge PR #21057, commits were: * A new recipe for BtToxin_scanner * Merge pull request #9 from bioconda/master update local * Merge pull request #7 from bioconda/master update local master * Merge pull request #5 from bioconda/master update local files * Merge pull request #3 from bioconda/master update local fork * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge pull request #1 from bioconda/master update local recipes
BiocondaBot
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Apr 13, 2020
Merge PR #21459, commits were: * Update meta.yaml * Merge branch 'master' into pgcgap * Update PGCGAP to v1.0.11 * Merge branch 'pgcgap' of https://github.com/liaochenlanruo/bioconda-recipes into pgcgap * canu>=1.8 * Merge branch 'master' into pgcgap * Update meta.yaml * add modeltest-ng and raxml-ng * Merge branch 'master' into pgcgap * add circlator and unicycler * Merge branch 'master' into pgcgap * update pgcgap to v1.0.10 * add abricate * Merge pull request #6 from liaochenlanruo/master update pgcgap branch * Merge pull request #5 from bioconda/master update local files * add gubbins 2.3.4 * Update meta.yaml * Update meta.yaml * Update meta.yaml * add gubbins 2.3.4 * add gubbins * combination of roary and orthofinder * Update meta.yaml * Merge pull request #4 from liaochenlanruo/master update local branch * Merge pull request #3 from bioconda/master update local fork * Merge pull request #2 from bioconda/master update fork * Update meta.yaml * Update meta.yaml * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge pull request #1 from bioconda/master update local recipes
BiocondaBot
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Apr 19, 2020
Merge PR #21599, commits were: * Update meta.yaml * Merge branch 'master' into pgcgap * Update PGCGAP to v1.0.11 * Merge branch 'pgcgap' of https://github.com/liaochenlanruo/bioconda-recipes into pgcgap * canu>=1.8 * Merge branch 'master' into pgcgap * Update meta.yaml * add modeltest-ng and raxml-ng * Merge branch 'master' into pgcgap * add circlator and unicycler * Merge branch 'master' into pgcgap * update pgcgap to v1.0.10 * add abricate * Merge pull request #6 from liaochenlanruo/master update pgcgap branch * Merge pull request #5 from bioconda/master update local files * add gubbins 2.3.4 * Update meta.yaml * Update meta.yaml * Update meta.yaml * add gubbins 2.3.4 * add gubbins * combination of roary and orthofinder * Update meta.yaml * Merge pull request #4 from liaochenlanruo/master update local branch * Merge pull request #3 from bioconda/master update local fork * Merge pull request #2 from bioconda/master update fork * Update meta.yaml * Update meta.yaml * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge pull request #1 from bioconda/master update local recipes
BiocondaBot
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Jun 19, 2020
Merge PR #22707, commits were: * Update meta.yaml * Update meta.yaml * Update meta.yaml * Merge branch 'master' into pgcgap * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Update meta.yaml * Update meta.yaml * Update meta.yaml * Update meta.yaml * Debug why there are python host dependencies getting pulled in * Update meta.yaml * Update pgcgap to v1.0.18 * Merge pull request #16 from bioconda/master update local master * Merge pull request #14 from bioconda/master Update local master * Merge pull request #9 from bioconda/master update local * Merge pull request #7 from bioconda/master update local master * Merge pull request #5 from bioconda/master update local files * Merge pull request #3 from bioconda/master update local fork * Merge branch 'master' of https://github.com/bioconda/bioconda-recipes * Merge pull request #1 from bioconda/master update local recipes
BiocondaBot
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Oct 29, 2022
Merge PR #37080, commits were: * Update meta.yaml * Update meta.yaml * Update meta.yaml * Merge branch 'master' into master * Merge branch 'master' into master * Merge pull request #8 from marcDabad/cvlr_package new emas commit * new emas commit * Merge pull request #7 from marcDabad/cvlr_package fix variable * fix variable * Merge branch 'master' into master * Merge pull request #6 from marcDabad/cvlr_package gcc 2 cc * gcc 2 cc * Merge branch 'master' into master * Merge pull request #5 from marcDabad/cvlr_package passes tests in local * passes tests in local * Merge branch 'master' into master * Merge pull request #4 from marcDabad/cvlr_package cc * cc * Merge pull request #3 from marcDabad/cvlr_package Cvlr package * Merge branch 'master' into master * Merge branch 'cvlr_package' of https://github.com/marcDabad/bioconda-recipes into cvlr_package * cvlr_recipe * Merge pull request #2 from marcDabad/cvlr_package Cvlr package * Merge branch 'master' into cvlr_package * Merge pull request #1 from bioconda/master update * cvlr_recipe
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Hi @johanneskoester, what's the procedure for submitting packages? I added a recipe for NCBI igblast that builds successfully on my machine, but am unsure of whether I need to additionally upload the build to anaconda.org or whether we'll have some git hook that does this automagically.