You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
I installed the local version epic through bioconda. However, when task was competed, there was a file named "chr1_before_find_islands.csv" which was created along with expected cvs files. Here is my shell snippet:
Will you please clarify this chr1 output? Or it is just the temporary file and can be neglected whatever. Or the error message we should take care and tune the parameter in the command line?
The text was updated successfully, but these errors were encountered:
On Sunday, February 11, 2018, Yisong Zhen ***@***.***> wrote:
I installed the local version epic through bioconda. However, when task
was competed, there was a file named "chr1_before_find_islands.csv" which
was created along with expected cvs files. Here is my shell snippet:
macs2 callpeak --treatment ${treat} --control ${control} \
--format BAM --gsize mm --name ${base} --bdg --qvalue 0.01
here is the excerpt of this file ("chr1_before_find_islands.csv")
Chromosome Bin ChIP Input Score
28 chr1 3007400 6 5.0 2.43113976041
134 chr1 3035800 6 4.0 2.43113976041
174 chr1 3046800 6 1.0 2.43113976041
177 chr1 3047400 6 3.0 2.43113976041
I am confused about this unwanted file. It seems that the run_epic.py will
output this file. (at line 60)
dfs[0].to_csv("chr1_before_find_islands.csv", sep=" ")
Will you please clarify this chr1 output? Or it is just the temporary file
and can be neglected whatever. Or the error message we should take care and
tune the parameter in the command line?
—
You are receiving this because you are subscribed to this thread.
Reply to this email directly, view it on GitHub
<#70>, or mute the thread
<https://github.com/notifications/unsubscribe-auth/AQ9I0l4vipgbG1ww5VuLe5PuA2Of45Pxks5tToFBgaJpZM4SBOC1>
.
I installed the local version epic through bioconda. However, when task was competed, there was a file named "chr1_before_find_islands.csv" which was created along with expected cvs files. Here is my shell snippet:
here is the excerpt of this file ("chr1_before_find_islands.csv")
I am confused about this unwanted file. It seems that the run_epic.py will output this file. (at line 60)
Will you please clarify this chr1 output? Or it is just the temporary file and can be neglected whatever. Or the error message we should take care and tune the parameter in the command line?
The text was updated successfully, but these errors were encountered: