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install trouble - conflicting ipython requirements #199
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The requirement has to do with ipymd, which lets your machine parse the markdown files as notebooks. Keep in mind this also requires modifying your ipython config file. Until we sort out how to get ipymd in Jupyter 4.0, the earlier version is required. I'd recommend using miniconda as an environment manager. It's surprisingly easy to use, and lets you have as many versions of files as you want. |
Thanks for the quick response! Sorry, I'm still a little confused. To solve Chris
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Hi Chris,
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Wow thanks!! Super helpful, I really appreciate it Chris On Sun, Feb 7, 2016 at 14:52 J W Debelius notifications@github.com wrote:
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I'm trying to download the American Gut data from EBI, but it looks like Chris On Sun, Feb 7, 2016 at 3:06 PM, Christopher Smillie csmillie@mit.edu
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What accession are you using? The full data are here: http://www.ebi.ac.uk/ena/data/view/ERP012803 On Mon, Feb 8, 2016 at 5:28 PM, cssmillie notifications@github.com wrote:
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Good catch, thanks. Will issue a PR shortly |
Actually, Im a bit confused, ipython is not specified in directly @jwdebelius, you're primarily using Jupyter > 4.0.0, right? |
Yes, I've noticed the differences between conda_req and pip_req (#203). As for the conda that is not an option for me :( (Python from source + pip + virtualenv) |
My questions/comments were resolved with #211 |
I'm trying to install americangut, but I run into this error:
But when I install ipython 4.1.1 and re-run the same command, the americangut installer replaces it with ipython 3.2.3. I think this might be because IPython<4.0.0 is listed in the conda requirements.
Any ideas on how to get this installed? Thanks!
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