migrate from burrito to dumpling

[RNAer]

also includes:

1. remove support for py34
2. fix diamond SAM parsing bug (the sam parser remains but is not used so far)
3. update sphinx config.py
4. set to use new skbio new interval metadata
5. other small changes
6. rm cache temporarily

[coveralls]

Coverage decreased (-11.02%) to 74.974% when pulling a8ec31d on RNAer:bf into 7050632 on biocore:master.

[mortonjt]

Add

Runs the view command to convert between the Diamond format and the Blast format.

[mortonjt]

The tests are passing, which is good.

We need to add a few tests tomorrow. Otherwise 👍

[josenavas]

Just curious - what is dumpling?

[RNAer]

https://github.com/rnaer/dumpling a replace for burrito as burrito is obsoleted and hard to use.

[josenavas]

If it is a replacement of burrito, why is it not living in biocore? specially if it is a dependency of micronota @antgonza @gregcaporaso @jairideout thoughts - which is the future of burrito?

[RNAer]

i am ok with moving into biocore. any comments are welcome : )

On Wed, Apr 27, 2016 at 11:38 PM, Jose Navas notifications@github.com
wrote:

If it is a replacement of burrito, why is it not living in biocore?
specially if it is a dependency of micronota @antgonza
https://github.com/antgonza @gregcaporaso
https://github.com/gregcaporaso @jairideout
https://github.com/jairideout thoughts - which is the future of burrito?

—
You are receiving this because you authored the thread.
Reply to this email directly or view it on GitHub
#75 (comment)

[coveralls]

Coverage decreased (-8.02%) to 77.978% when pulling 3c3476c on RNAer:bf into 7050632 on biocore:master.