Merge pull request #59 from biocore/snakemake

Snakefile: create outdirs if do not exist
biocore · Aug 8, 2017 · dd01070 · dd01070
2 parents 81102ae + 2701f12
commit dd01070
Showing 1 changed file with 5 additions and 0 deletions.
diff --git a/microprot/snakemake/Snakefile b/microprot/snakemake/Snakefile
@@ -23,6 +23,11 @@ try:
 except KeyError:
     pass
 
+# create output directories if they don't exist
+for _out_dir_name in ['PDB', 'CM', 'AB', 'log', 'pkg']:
+    _out_dir_path = '%s/%s' % (config['MICROPROT_OUT'], _out_dir_name)
+    if not exists(_out_dir_path):
+        makedirs(_out_dir_path)
 
 SEQ_ids = snakemake_helpers.parse_inputs(inp_fp=config['inp_fp'],
                                          inp_from=config['inp_from'],