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@bioinformatics-polito

Bioinformatics - EDA Group @ Politecnico di Torino

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  1. BioSeqZip BioSeqZip Public

    An exact collapser for Second-Generation Sequencing datasets.

    C++ 6

  2. DEEPrior DEEPrior Public

    Python 6 1

  3. PhyliCS PhyliCS Public

    A pipeline for multi-sample copy-number variation (CNV) analysis on single-cell DNA sequencing data and intra-tumor heterogeneity quantification.

    Python 3 1

  4. EGAsubmitter EGAsubmitter Public

    Python 3

  5. BioSeqZip-BWA BioSeqZip-BWA Public

    A fork of BWA v0.17.7 which expands BioSeqZip collapsed files at the end of the mapping procedure.

    C 1

  6. PhyliCS_usage PhyliCS_usage Public

    Usage examples for PhyliCS.

    Jupyter Notebook 1

Repositories

Showing 10 of 10 repositories
  • EGAsubmitter Public
    bioinformatics-polito/EGAsubmitter’s past year of commit activity
    Python 3 0 2 0 Updated Oct 24, 2024
  • DEEPrior Public
    bioinformatics-polito/DEEPrior’s past year of commit activity
    Python 6 AGPL-3.0 1 1 3 Updated May 22, 2023
  • LaRA2-LinearPartition Public Forked from LinearFold/LinearPartition

    Linear-Time Approximation of RNA Folding Partition Function and Base Pairing Probabilities

    bioinformatics-polito/LaRA2-LinearPartition’s past year of commit activity
    C++ 0 18 0 0 Updated Apr 15, 2022
  • LaRA2-mafft Public

    In this project, we have the latest version of mafft program enhanced with the support for the new Sequence/Structure alignment tool named LaRA2

    bioinformatics-polito/LaRA2-mafft’s past year of commit activity
    C 0 0 3 0 Updated Dec 21, 2021
  • PhyliCS Public

    A pipeline for multi-sample copy-number variation (CNV) analysis on single-cell DNA sequencing data and intra-tumor heterogeneity quantification.

    bioinformatics-polito/PhyliCS’s past year of commit activity
    Python 3 1 0 1 Updated Nov 8, 2021
  • PhyliCS_usage Public

    Usage examples for PhyliCS.

    bioinformatics-polito/PhyliCS_usage’s past year of commit activity
    Jupyter Notebook 1 0 0 0 Updated May 19, 2021
  • BioSeqZip Public

    An exact collapser for Second-Generation Sequencing datasets.

    bioinformatics-polito/BioSeqZip’s past year of commit activity
    C++ 6 0 0 0 Updated May 11, 2020
  • SCTools Public

    A set of tools for handling Single-Cell datasets

    bioinformatics-polito/SCTools’s past year of commit activity
    CMake 0 AGPL-3.0 0 0 0 Updated Jan 16, 2020
  • BioSeqZip-Yara Public

    A fork of Yara v0.9.11 which expands BioSeqZip collapsed files at the end of the mapping procedure.

    bioinformatics-polito/BioSeqZip-Yara’s past year of commit activity
    C++ 0 0 0 0 Updated Aug 30, 2019
  • BioSeqZip-BWA Public

    A fork of BWA v0.17.7 which expands BioSeqZip collapsed files at the end of the mapping procedure.

    bioinformatics-polito/BioSeqZip-BWA’s past year of commit activity
    C 1 GPL-3.0 0 0 0 Updated Aug 26, 2019

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