This is a one-off Nextstrain build for betacoronavirus, visible at nextstrain.org/groups/blab/beta-cov.

All data to reproduce the build is housed in this repository. The entire build can be regenerated by cloning the repository and running

snakemake -p

with a local Nextstrain installation or by running

nextstrain build .

with a containerized Nextstrain installation.

The resulting output JSON at auspice/beta-cov.json can be visualized by running auspice view --datasetDir auspice or nextstrain view auspice/ depending on local vs containerized installation.