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Fix DOI links to use preferred https://doi.org URL

Thank you @katrinleinweber!
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trvrb committed Jul 24, 2019
1 parent 5afa812 commit f869fb26e5ec6b4749559d1f2ae1ca9305e810f8
Showing with 2 additions and 2 deletions.
  1. +1 −1 README.md
  2. +1 −1 titer_model/README.md
@@ -35,4 +35,4 @@ pip install -r requirements

## Citation

[Bell SM, Katzelnick L, Bedford T. 2018. Dengue antigenic relationships predict evolutionary dynamics. bioRxiv: 432054.](http://dx.doi.org/10.1101/432054)
[Bell SM, Katzelnick L, Bedford T. 2018. Dengue antigenic relationships predict evolutionary dynamics. bioRxiv: 432054.](https://doi.org/10.1101/432054)
@@ -7,7 +7,7 @@ Full model details can be found in [Neher et al.](https://www.pnas.org/content/1

## Running the titer model

This model was originally published in [Neher et al (PNAS, 2016)](http://dx.doi.org/10.1073/pnas.1525578113) and implemented as part of the Nextstrain [augur package](https://github.com/nextstrain/augur). The relevant portions of the repository have been reproduced here under [`implementation-nextstrain-augur`](implementation-nextstrain-augur/). Documentation, including install instructions, for the full augur pipeline can be found [here](https://github.com/nextstrain/augur/tree/6d9f7088d8792196e5021c67b876d9de1d2a13dd). Note that for future reuse, I would actually recommend running the model via the newly modularized implementation [here](https://github.com/nextstrain/augur/blob/master/augur/titers.py).
This model was originally published in [Neher et al (PNAS, 2016)](https://doi.org/10.1073/pnas.1525578113) and implemented as part of the Nextstrain [augur package](https://github.com/nextstrain/augur). The relevant portions of the repository have been reproduced here under [`implementation-nextstrain-augur`](implementation-nextstrain-augur/). Documentation, including install instructions, for the full augur pipeline can be found [here](https://github.com/nextstrain/augur/tree/6d9f7088d8792196e5021c67b876d9de1d2a13dd). Note that for future reuse, I would actually recommend running the model via the newly modularized implementation [here](https://github.com/nextstrain/augur/blob/master/augur/titers.py).

### 1 - Prepare input files

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