Tensorflow model for MRI to CT synthesis.
See 1 to download, extract, convert and coregister data.
Then use python convert.py to convert .nii to .tfrecord format.
Clone this repository, install python 3.6.6 and then the required packages
via pip install -r requirements.txt, this also ensures that tensorflow will
be installed as 1.5.1. Newer tensorflow versions contain api changes, thus
will give an error. Feel free to send a PR to make the code compatible with
newer versions of tensorflow.
python train_unet.py \
--inputs-path data/tfrecord/training/mr.tfrecord \
--targets-path data/tfrecord/training/ct.tfrecord \
--checkpoint-path results/unet