vcf-like files

Merge pull request #4 from mikecormier/master

Allow for "vcf like" files to be soted

bugfix

v0.1.3

dont convert to empty chromosome if mapping is not found

fix for remappings

v0.1.2

fix gsort

chromosome re-mappings

with this release, you can give gsort a mapping file for chromosome names e.g. from here and it will map the chromosome names before doing the sort (so the order file should contain names for the new order).

add --parent argument for GFF sorting

0.0.6

• allow sorting GFF with respect to parent so that of elements with the same start, the parent will always come first.

v0.0.5

fix bug with sv sorting.

v0.0.4

this release is unchanged from v0.0.3 but uses go1.7 to get around an error on osx when built with earlier version of go.

performance and memory improvements

previously gsort could use a lot more memory than requested. this release reduces the memory use and improves performance for most cases.

v0.0.2

• allow bed files with 'track' and 'browser' headers.
• add newline to stderr msg for version.
• fix memory use.

Initial Release

v0.0.1

version