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Extra "FORMAT" in the header line #123

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liqg opened this issue May 14, 2020 · 3 comments
Closed

Extra "FORMAT" in the header line #123

liqg opened this issue May 14, 2020 · 3 comments

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@liqg
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liqg commented May 14, 2020

I annotate a VCF file with only 1-8 columns (INFO only), however, the annotated VCF has an extra "FORMAT" field in the header line.
I have tested 0.3.3, 0.3.0 and 0.2.6. The same problem happened.

@brentp
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brentp commented May 15, 2020

well, that's not good. for now, you'll have to pipe to cut -f 1-8 and i'll get a fix for this out next month.

@dennishendriksen
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Ran into the same issue. I can probably work around it (bit tricky for my case because inputs sometimes contain samples/sometimes don't), but a fix would be appreciated @brentp :)

@brentp
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brentp commented Sep 19, 2022

This is fixed in v0.3.4: https://github.com/brentp/vcfanno/releases/tag/v0.3.4
thanks for reporting.

@brentp brentp closed this as completed Sep 19, 2022
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