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Tested options including TRUNCATE_SEQUENCE_NAMES... and LINE_LENGTH
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...test/resources/org/broadinstitute/hellbender/tools/picard/fasta/truncatedFASTA_WS_3.fasta
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,133 @@ | ||
| >chromosome | ||
| taacc | ||
| ctaac | ||
| cctaa | ||
| cccta | ||
| accct | ||
| aaccc | ||
| taacc | ||
| ctaac | ||
| cctaa | ||
| cccta | ||
| accct | ||
| aaccc | ||
| taacc | ||
| ctaac | ||
| cctaa | ||
| cccta | ||
| accct | ||
| aaccc | ||
| taacc | ||
| ctaac | ||
| cctaa | ||
| cccaa | ||
| cccta | ||
| accct | ||
| aaccc | ||
| taacc | ||
| ctaac | ||
| cctaa | ||
| cccta | ||
| acccc | ||
| taacc | ||
| ctaac | ||
| cctaa | ||
| cccta | ||
| accct | ||
| aacct | ||
| aaccc | ||
| taacc | ||
| ctaac | ||
| cctaa | ||
| cccta | ||
| accct | ||
| aaccc | ||
| taacc | ||
| ctaac | ||
| cctaa | ||
| cccct | ||
| aaccc | ||
| taacc | ||
| ctaaa | ||
| cccta | ||
| aaccc | ||
| taacc | ||
| ctaac | ||
| cctaa | ||
| cccta | ||
| accct | ||
| aaccc | ||
| caacc | ||
| ccaac | ||
| CCGTC | ||
| AGCCT | ||
| TTTCT | ||
| TTGAC | ||
| CTCTT | ||
| CTTTC | ||
| TGTTC | ||
| ATGTG | ||
| TATTT | ||
| GCTGT | ||
| CTCTT | ||
| AGCCC | ||
| AGACT | ||
| TCCCG | ||
| TGTCC | ||
| TTTCC | ||
| ACCGG | ||
| GCCTT | ||
| TGAGA | ||
| GGTCA | ||
| CAGGG | ||
| TCTTG | ||
| ATGCT | ||
| GTGGT | ||
| CTTCA | ||
| TCTGC | ||
| AGGTG | ||
| TCTGA | ||
| CTTCC | ||
| AGCAA | ||
| CTGCT | ||
| GGCCT | ||
| GTGCC | ||
| AGGGT | ||
| GCAAG | ||
| CTGAG | ||
| CACTG | ||
| GAGTG | ||
| GAGTT | ||
| TTCCT | ||
| GTGGA | ||
| GAGGA | ||
| GCCAT | ||
| GCCTA | ||
| GAGTG | ||
| GGATG | ||
| GGCCA | ||
| TTGTT | ||
| CATCT | ||
| TCTGG | ||
| CCCCT | ||
| GTTGT | ||
| CTGCA | ||
| TGTAA | ||
| CTTAA | ||
| TACCA | ||
| CAACC | ||
| AGGCA | ||
| TAGGG | ||
| GAAAG | ||
| ATTGG | ||
| AGGAA | ||
| AGATG | ||
| AGTGA | ||
| GAGCA | ||
| TCAAC | ||
| TTCTC | ||
| TCACA | ||
| ACCTA | ||
| GGCCA | ||
| GTAAG | ||
| TAGTG |