added missing line for bwaDbs to taxon_filter wdl

broadinstitute · Jan 25, 2018 · 98d4dbe · 98d4dbe
1 parent dee3e8b
commit 98d4dbe
Showing 1 changed file with 1 addition and 0 deletions.
diff --git a/pipes/WDL/workflows/tasks/taxon_filter.wdl b/pipes/WDL/workflows/tasks/taxon_filter.wdl
@@ -26,6 +26,7 @@ task deplete_taxa {
     # bmtagger and blast db args
     DBS_BMTAGGER="${sep=' ' bmtaggerDbs}"
     DBS_BLAST="${sep=' ' blastDbs}"
+    DBS_BWA="${sep=' ' bwaDbs}"
     if [ -n "$DBS_BMTAGGER" ]; then DBS_BMTAGGER="--bmtaggerDbs $DBS_BMTAGGER"; fi
     if [ -n "$DBS_BLAST" ]; then DBS_BLAST="--blastDbs $DBS_BLAST"; fi
     if [ -n "$DBS_BWA" ]; then DBS_BWA="--bwaDbs $DBS_BWA"; fi