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update pangolin to pdata 1.9 #425

Merged
merged 2 commits into from
Jun 6, 2022
Merged

update pangolin to pdata 1.9 #425

merged 2 commits into from
Jun 6, 2022

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dpark01
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@dpark01 dpark01 commented Jun 6, 2022

Update default pangolin docker to latest from staphb Quay staphb/pangolin:4.0.6-pdata-1.9.

What to expect:

  • adds new BA.2 sublineages and 2 new recombinant lineages:
    BA.2.10.2
    BA.2.23.1
    BA.2.35
    BA.2.36
    BA.2.37
    BA.2.38
    BA.2.39
    BA.2.40
    BA.2.40.1
    BA.2.41
    XV
    XW
  • Withdrew lineage BA.2.3.3
  • 🚨 pangolearn consumes even more RAM than before, we have found that at least 19GB of RAM is required to avoid out-of-memory-errors 🚨

Check out the Pangolin documentation and release notes for more details:

@dpark01 dpark01 marked this pull request as ready for review June 6, 2022 14:40
@dpark01 dpark01 merged commit 440e47e into master Jun 6, 2022
@dpark01 dpark01 deleted the pangolin branch June 6, 2022 17:00
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