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IMPORTANT: THIS REPOSITORY HAS MOVED under the Fiji organization umbrella. Please visit https://github.com/fiji/Kappa for contributions or report a bug. You can also visit the Image.sc forum.


Kappa logo

Binder

Kappa

Kappa is A Fiji plugin for Curvature Analysis.

It allows a user to measure curvature in images in a convenient way. You can trace an initial shape with a B-Spline curve in just a few clicks and then fit that curve to image data with a minimization algorithm. It’s fast and robust.

Kappa Screenshot

See also the ImageJ Wiki page.

Publication

Analysis done for the paper is available and can be reproduced from this older. See Analysis.

You can fire a remote Jupyter notebook server and reproduce the analysis using Binder: https://mybinder.org/v2/gh/brouhardlab/Kappa/master?urlpath=lab/tree/Analysis/Notebooks.

Installation

  • Start Fiji.
  • Click on Help ▶ Update....
  • In the new window, click on Manage update sites.
  • Scroll to find Kappa in the column Name. Click on it.
  • Click Close and then Apply changes.
  • Restart Fiji.
  • Open your image.
  • Then you can start the plugin with Plugins ► Analyze ► Kappa - Curvature Analysis.

Documentation

See documentation in the docs/ folder.

Authors

Kappa has been created originally by Kevan Lu and is now maintained by Hadrien Mary.

This work started in 2013 in the Gary Brouhard laboratory at the University of McGill.

License

MIT license. See LICENSE.txt

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A Fiji plugin for Curvature Analysis.

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