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To use SODA, first download and install the Pennsieve Agent. Then, follow the instructions below for your specific platform:
- Download the Windows installer.
- Double click on the installer (.exe file), it will start the installation process (if there is a permission issue try to right-click and select "Run as administrator").
- Follow the installation instructions.
- Once the application is installed, you can run the application by either running the desktop shortcut, searching for "SODA" on the start menu, or from the installation folder.
- To stop the application, simply click on the cross in the top right corner.
The downloaded installer file could be deleted since it is not necessary to run SODA. The SODA app can be uninstalled from the Program manager (under Control Panel) like any other app on Windows.
- Download the macOS installer.
- Double-click on the installer (.dmg file) and, in the installation window, drag the SODA icon into the "Applications" folder. Security preferences may need to be changed (System Preferences>Security & Privacy>General Tab>"Open anyway").
- To stop the application, click on the red circle/button in the top left corner.
The downloaded installer could be deleted since it is not necessary to run SODA. To uninstall the SODA app, simply delete it from your computer’s "Applications" folder.
- Download Linux AppImage.
- Right-click on the downloaded file and go to the permissions tab.
- Click the 'Allow executing file as program' and make sure it has a checkmark.
- Double click the downloaded SODA app icon and it should open the app.
- To stop the application click on the red circle/button in the top left corner.
Since our Linux SODA app is in the AppImage format, you can move this file anywhere on your computer and run it. If you would like to move the app into the applications folder, we recommend you use the open-source AppImage Launcher to organize and handle all AppImage programs for your Linux system.
SODA may work on OS versions other than those mentioned above but it hasn't been tested.
Organize and submit SPARC datasets with SODA
Connect your Pennsieve account with SODA
Upload a local dataset to Pennsieve
Connect your Airtable account with SODA
Create dataset_description.xlsx
Submit for pre-publishing review
Installing the Pennsieve Agent
Pennsieve Agent is already running
Sending log files to SODA Team
Issues regarding hidden files or folders
How to structure the submission metadata file
How to structure the dataset_description metadata file
How to structure the subjects metadata file
How to structure the samples metadata file