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RASE: predicting antibiotic resistance using nanopore sequencing within minutes.
Lineage calling can identify antibiotic resistant clones within minutes
Code for constructing RASE databases: S.pneumoniae as well as custom ones.
metadata for ongoing or published projects
Data and pipeline for Mortality in Puerto Rico after Hurricane Maria
Disty McMatrixface - compute a distance matrix from a core genome alignment file
SAMsift – advanced filtering and tagging of SAM/BAM alignments using Python expressions.
Simulation of Oxford Nanopore reads. A fork of NanoSim.