@c2-d2

Center for Communicable Disease Dynamics – Harvard University

Center for Communicable Disease Dynamics at the Harvard T.H. Chan School of Public Health

  • RASE: predicting antibiotic resistance using nanopore sequencing within minutes.

    Python 1 MIT Updated Oct 19, 2018
  • Lineage calling can identify antibiotic resistant clones within minutes

    Shell 2 MIT Updated Oct 1, 2018
  • Code for constructing RASE databases: S.pneumoniae as well as custom ones.

    Python 2 MIT Updated Sep 27, 2018
  • Python 1 MIT Updated Aug 29, 2018
  • metadata for ongoing or published projects

    Perl 2 Updated Jul 26, 2018
  • Data and pipeline for Mortality in Puerto Rico after Hurricane Maria

    HTML 31 13 MIT Updated Jun 15, 2018
  • Shell 1 MIT Updated Dec 29, 2017
  • Disty McMatrixface - compute a distance matrix from a core genome alignment file

    C++ 4 MIT Updated Sep 2, 2017
  • SAMsift – advanced filtering and tagging of SAM/BAM alignments using Python expressions.

    Python 1 MIT Updated Sep 2, 2017
  • Simulation of Oxford Nanopore reads. A fork of NanoSim.

    Python 2 Updated May 16, 2017
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